PaperBLAST – Find papers about a protein or its homologs

 

Align XP_013937677.1 to PF16335 (DUF4965)

XP_013937677.1 has 689 amino acids

Query:       DUF4965  [M=174]
Accession:   PF16335.9
Description: Domain of unknown function (DUF4965)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-81  256.7   0.3      1e-80  255.6   0.3    1.6  1  XP_013937677.1  


Domain annotation for each sequence (and alignments):
>> XP_013937677.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.6   0.3     1e-80     1e-80       1     174 []     341     511 ..     341     511 .. 0.99

  Alignments for each domain:
  == domain 1  score: 255.6 bits;  conditional E-value: 1e-80
         DUF4965   1 aggekYadllalsvRqafaaleltgedntsdvllflKeissngnvntvdviypaaPlflylnpellkllLeplleyqesgrypkkyaahDlGtsY 95 
                     agg++Y ++++l+vRqaf+al++tg+   ++v +flKeissn++++tvdvi+p++P++lyl+p+l+k+ L+plle+qesg+yp+kya+hDlG+ +
  XP_013937677.1 341 AGGDDYLTITSLAVRQAFGALQYTGTP--DNVRVFLKEISSNSDIQTVDVIFPTWPIMLYLDPNLIKYTLSPLLENQESGHYPNKYAIHDLGR-F 432
                     589*********************766..99**************************************************************.* PP

         DUF4965  96 PnatghndgedeqmpveesGnmlimalayaqasgdtsllkqyyelLkqwadYLvengldpanqlstddfagalanqtnL 174
                     P+a g  +g+de+mp+ee+Gnm+im+l+yaq++gd ++l+++++l+ qwa+YL+e++ +panqlstddfag+lanqtnL
  XP_013937677.1 433 PQALGYPQGNDEAMPLEECGNMIIMMLSYAQKTGDVDYLNEHWQLMAQWAEYLIEDAKIPANQLSTDDFAGHLANQTNL 511
                     ******************************************************************************8 PP



Or compare XP_013937677.1 to CDD or PaperBLAST