PaperBLAST – Find papers about a protein or its homologs

 

Align XP_754902.1 to PF16335 (DUF4965)

XP_754902.1 has 691 amino acids

Query:       DUF4965  [M=174]
Accession:   PF16335.9
Description: Domain of unknown function (DUF4965)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-85  271.2   1.6    2.6e-85  270.5   1.6    1.4  1  XP_754902.1  


Domain annotation for each sequence (and alignments):
>> XP_754902.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.5   1.6   2.6e-85   2.6e-85       2     174 .]     340     510 ..     339     510 .. 0.99

  Alignments for each domain:
  == domain 1  score: 270.5 bits;  conditional E-value: 2.6e-85
      DUF4965   2 ggekYadllalsvRqafaaleltgedntsdvllflKeissngnvntvdviypaaPlflylnpellkllLeplleyqesgrypkkyaahDlGtsYPnat 99 
                  +g++Y ++++ls+Rqafaa++l+g+   ++++lf+Keissngn+ntvdvi+pa+P+fly+npell+ll++p +e qesg+yp++ya+hD+Gt+YPnat
  XP_754902.1 340 AGQDYLTITSLSARQAFAATQLCGTL--QNPYLFMKEISSNGNMNTVDVIFPAHPVFLYTNPELLELLMKPHFEIQESGQYPNAYAMHDIGTHYPNAT 435
                  79*********************877..9********************************************************************* PP

      DUF4965 100 ghndgedeqmpveesGnmlimalayaqasgdtsllkqyyelLkqwadYLvengldpanqlstddfagalanqtnL 174
                  gh +g+de+mp+ee+Gnm+imalaya +s +t++l+++y+lL+qw++YLv+++++panq+stddfag+lanqtnL
  XP_754902.1 436 GHPEGNDEPMPLEECGNMIIMALAYALKSSNTDYLNEHYPLLEQWTSYLVDEAIYPANQISTDDFAGPLANQTNL 510
                  **************************************************************************8 PP



Or compare XP_754902.1 to CDD or PaperBLAST