PaperBLAST – Find papers about a protein or its homologs

 

Align H9EWF5 to PF16401 (DUF5009)

H9EWF5 has 635 amino acids

Query:       DUF5009  [M=260]
Accession:   PF16401.9
Description: Domain of unknown function (DUF5009)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-10   25.1   0.4    6.1e-10   25.1   0.4    3.1  4  H9EWF5    


Domain annotation for each sequence (and alignments):
>> H9EWF5  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.31      0.31      10      39 ..       5      38 ..       4      40 .. 0.63
   2 !    3.1   0.0     0.003     0.003       2      18 ..     240     256 ..     239     260 .. 0.88
   3 !   25.1   0.4   6.1e-10   6.1e-10      48     104 ..     273     329 ..     265     364 .. 0.91
   4 ?   -3.2   0.3      0.26      0.26     160     198 ..     481     522 ..     472     556 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.31
  DUF5009 10 Giaillmvlsasiafsil..pgwmy..haqvppp 39
             G a+++++l+as+ ++ l  pg  +   aq+ pp
   H9EWF5  5 GRALVVLLLAASVLSAALlaPGGSSerDAQAAPP 38
             7788999999999885442355443225666666 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.003
  DUF5009   2 aksldalrGiaillmvl 18 
               +s+d++rGia++lmv+
   H9EWF5 240 LRSVDTFRGIALILMVF 256
              5799***********97 PP

  == domain 3  score: 25.1 bits;  conditional E-value: 6.1e-10
  DUF5009  48 pGitwvdlvfpfflfamGaaiplalkkkvekgssklkvlldiikrfvlltffalftm 104
               G+t  dlvfp+f+f mG++i l+++   ++g sk+++l +i+ r  ll+   + + 
   H9EWF5 273 NGLTVADLVFPWFVFIMGSSIFLSMTSILQRGCSKFRLLGKIAWRSFLLICIGIIIV 329
              699******************************************999998887765 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 0.26
  DUF5009 160 lllllqfkngkkfslyk...sdiiilvlanmalfgsliyllt 198
              ++++l+ + gk + +yk   +di+i   a   ++g +  +lt
   H9EWF5 481 VMAFLGVQAGKILLYYKaqtKDILIRFTAWCCILGLISVVLT 522
              444555555544433331113455544444444444433333 PP



Or compare H9EWF5 to CDD or PaperBLAST