VIMSS1956338 has 253 amino acids
Query: Rv2179c-like [M=177]
Accession: PF16473.9
Description: 3'-5' exoribonuclease Rv2179c-like domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-13 35.6 0.1 2.9e-12 32.8 0.1 2.0 1 VIMSS1956338
Domain annotation for each sequence (and alignments):
>> VIMSS1956338
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.8 0.1 2.9e-12 2.9e-12 4 176 .. 74 227 .. 72 228 .. 0.76
Alignments for each domain:
== domain 1 score: 32.8 bits; conditional E-value: 2.9e-12
Rv2179c-like 4 miDiEtlgneetaaivsIGavffdpetGelGeeFyarvdlesseeagaevdaeTikWWlkqssearaellkddaksledalkeleefieenedaksl 100
++DiE +g ++ +i++IGav+++ ++ ++F++ v++++ e+ e + + +e++ ++a+sl ++l++++ f+ k+
VIMSS1956338 74 IVDIESTGGVSKGEILEIGAVKIQNSKE--IARFQSFVKVKEIPENITEL------------TGITYEMV-ENAPSLAKVLSDFRLFL------KDS 149
69*******************8875554..489*****996665433333............34556777.5679*************......577 PP
Rv2179c-like 101 kvwgngasfDnviLraafelagleipwkfwndrdvrTlvela.....kelgl.ekkrdipfegvkhnAlddAkhqakivsai 176
+++++ +fD + +++a++ + + + +r + T+ + ++ +l k+ + e+++h AlddA + a+i++++
VIMSS1956338 150 IFVAHNVRFDYSFISRALNEC----GFGILLNRRICTIEFAQcciesPKYKLeVLKEFLGVENTHHRALDDALAAAEIFKYC 227
89***************8885....67777888888888777544333333322244445569***************9988 PP
Or compare VIMSS1956338 to CDD or PaperBLAST