VIMSS19798 has 350 amino acids
Query: Rv2179c-like [M=177]
Accession: PF16473.9
Description: 3'-5' exoribonuclease Rv2179c-like domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.4e-12 31.9 0.4 3.3e-11 29.3 0.0 2.2 2 VIMSS19798
Domain annotation for each sequence (and alignments):
>> VIMSS19798
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.7 0.2 0.46 0.46 54 63 .. 9 18 .. 5 52 .. 0.78
2 ! 29.3 0.0 3.3e-11 3.3e-11 4 176 .. 111 266 .. 108 267 .. 0.75
Alignments for each domain:
== domain 1 score: -3.7 bits; conditional E-value: 0.46
Rv2179c-like 54 daeTikWWlk 63
++ + +WW++
VIMSS19798 9 NKRAWMWWFQ 18
5667788875 PP
== domain 2 score: 29.3 bits; conditional E-value: 3.3e-11
Rv2179c-like 4 miDiEtlgne.etaaivsIGavffdpetGelGeeFyarvdlesseeagaevdaeTikWWlkqssearaellkddaksledalkeleefieenedaks 99
+iD+Et+g+ + +i++IGav + Ge+ ++F++ v+++s ++ ae ++ T ++ l +a+s+++al+el+ f+ +
VIMSS19798 111 FIDLETTGSCpIKHEILEIGAVQ--VKGGEIINRFETLVKVKSVPDYIAELTGIT-----------YEDTL--NAPSAHEALQELRLFL------GN 186
8********97899********5..5699************99988886666655...........34444..4889************......57 PP
Rv2179c-like 100 lkvwgngasfDnviLraafelagleipwkfwndrdvrTlvelake.lglekkrdipfe......gvkhnAlddAkhqakivsai 176
+++++a+fD L ++f +l++p + ++ Tl ++++ l+++ + + +e +v h A +dA + k+++ +
VIMSS19798 187 SVFVAHNANFDYNFLGRYFVE-KLHCPLL---NLKLCTLDLSKRAiLSMRYSLSFLKEllgfgiEVSHRAYADALASYKLFEIC 266
789**************9988.5777733...3334444444444333333333333344444789********9999988765 PP
Or compare VIMSS19798 to CDD or PaperBLAST