PaperBLAST – Find papers about a protein or its homologs

 

Align WP_023974187.1 to PF16473 (Rv2179c-like)

WP_023974187.1 has 310 amino acids

Query:       Rv2179c-like  [M=177]
Accession:   PF16473.9
Description: 3'-5' exoribonuclease Rv2179c-like domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-15   43.3   0.5      1e-14   40.8   0.5    2.0  1  WP_023974187.1  


Domain annotation for each sequence (and alignments):
>> WP_023974187.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.5     1e-14     1e-14       1     176 [.       2     160 ..       2     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1e-14
    Rv2179c-like   1 nhlmiDiEtlgneetaaivsIGavffdpetGelGeeFyarvdlesseeagaevdaeTikWWlkqssearaellkddaksledalkeleefieene 95 
                     n ++iD+Et++++ + + +sIG+++++  +Ge+ e+ +  +++++ + +  ++  +           +r +++kd+   +++++++++++ +   
  WP_023974187.1   2 NFVAIDFETANEK-RNSPCSIGIIVVK--NGEIVEKVHHLIKPKEMRFMPINIGIH----------GIRPSMVKDE-LEFDKVWEKIKQYFN--- 79 
                     5689******555.7778******775..**************8887666666555..........4699999888.78************6... PP

    Rv2179c-like  96 dakslkvwgngasfDnviLraafelagleip.wkfwndrdv.rTlvelakelgl.ekkrdipfegvkhnAlddAkhqakivsai 176
                        +  v++++asfD+++Lr+ +el  +e+p +++  + ++ r   +  ++ +l   ++ + +e ++h+Al+dA+++ +i+++i
  WP_023974187.1  80 ---DNLVIAHNASFDISVLRRTLELYEIEMPkFQYACTMKLsRNFYSNLDNARLnTVNNFLGYEFKHHDALADAIACGNILTNI 160
                     ...445*******************99986647776554441333333344555234455677789**********99998766 PP



Or compare WP_023974187.1 to CDD or PaperBLAST