PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS112313 to PF16887 (DUF5081)

VIMSS112313 has 225 amino acids

Query:       DUF5081  [M=231]
Accession:   PF16887.9
Description: Domain of unknown function (DUF5081)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-86  274.2   7.3    3.6e-86  274.1   7.3    1.0  1  VIMSS112313  


Domain annotation for each sequence (and alignments):
>> VIMSS112313  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.1   7.3   3.6e-86   3.6e-86       1     230 [.       5     223 ..       5     224 .. 0.99

  Alignments for each domain:
  == domain 1  score: 274.1 bits;  conditional E-value: 3.6e-86
      DUF5081   1 vkkidsFsveELylLagaigvsdvfglPdkkaflLldeevleeakeaLkeKgllteeekltdagfkviellkeYisskkyvRiNnllvafleedkdel 98 
                  vk+id+Fs+eEL++L+g+       +lP +++f+L+d++++eeak aL+eK+l+te++kltdagfkv++l++eYis+++++RiN++++a+++++kde+
  VIMSS112313   5 VKRIDYFSYEELTILGGS-------KLP-LVNFELFDPSNFEEAKVALIEKELVTENDKLTDAGFKVATLVREYISAIVNIRINDMYFAPFSYEKDEY 94 
                  79****************.......***.********************************************************************* PP

      DUF5081  99 vllveiepnkkyqleiinKlvalkslldeiPlllRepkeneteFlkkkltne..erktaeeldlkknvleiEiykreeekkekdsakyeeq...flay 191
                  +ll++++ n+++q++iinK++a++s+++++Pll+R++k+n+++F  k++++e  e+ ++e++d++++vleiEiy+++++++++++++ye++    ++y
  VIMSS112313  95 ILLSRFK-NNGFQIRIINKDIAWWSIVQSYPLLMRQEKSNDWDF--KQIDDEilENLNNESIDTIGRVLEIEIYNHQGDPQQSLYNIYEQNdllLIRY 189
                  *******.************************************..******************************************99999999** PP

      DUF5081 192 eekdkllavdvdedkyyraslyallkllfDeleipyeka 230
                  + kdk+l+v+++++++++++l++     fD++e++++ka
  VIMSS112313 190 PLKDKVLNVHIGVINTFIRELFG-----FDTDENHINKA 223
                  ***********************.....**********9 PP



Or compare VIMSS112313 to CDD or PaperBLAST