PaperBLAST – Find papers about a protein or its homologs

 

Align XP_003347103.1 to PF17043 (MAT1-1-2)

XP_003347103.1 has 359 amino acids

Query:       MAT1-1-2  [M=146]
Accession:   PF17043.9
Description: Mating type protein 1-1-2 of unknown function
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-38  117.7   0.0    3.4e-38  116.8   0.0    1.4  1  XP_003347103.1  


Domain annotation for each sequence (and alignments):
>> XP_003347103.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.0   3.4e-38   3.4e-38      42     145 ..     136     257 ..     121     258 .. 0.92

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 3.4e-38
        MAT1-1-2  42 sia.ddeaeeaPakefglvqne......vkvsdqgkkllvkvagdenwrvaplwHPlrrvPGspWnkFirNtq......lplF.....teserkp 118
                     s++ + +a+e+P+kefglv+++       +v  ++k+++v +ag+ nw+v++++HPlrrvPG+pW+kF++N++      l+lF     ++s+r++
  XP_003347103.1 136 SLTiHKDAQEIPGKEFGLVCGKevhvlgGHVVRRSKRDVVGQAGGVNWHVDHTHHPLRRVPGTPWHKFFGNVEvepnkpLHLFgdftsPKSDRNG 230
                     44446778**************9**99977899********************************************999999************ PP

        MAT1-1-2 119 kakikyilPesalvladefeseyeevr 145
                     ++k+ +i+Pe+a++++de++se+++v+
  XP_003347103.1 231 HRKFPVIIPETAMFIQDEISSEHQQVA 257
                     ************************997 PP



Or compare XP_003347103.1 to CDD or PaperBLAST