VIMSS3243279 has 317 amino acids
Query: DUF5309 [M=283]
Accession: PF17236.6
Description: Family of unknown function (DUF5309)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.6e-107 343.9 1.1 4e-107 343.7 1.1 1.0 1 VIMSS3243279
Domain annotation for each sequence (and alignments):
>> VIMSS3243279
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 343.7 1.1 4e-107 4e-107 1 283 [] 19 310 .. 19 310 .. 0.97
Alignments for each domain:
== domain 1 score: 343.7 bits; conditional E-value: 4e-107
DUF5309 1 dLsdvisriaptdTPllsligkekaksttveWqedeLnpdaanaqvEGdeatvkaesararlgNytqIfkksvsvSgTaeavnkaGrkdelayqvak 97
dL d+i++iap+dTP++s+igk+ a+++t+eWq+deL + ++n++vEG++at+ka s +++l+Ny+qI++++++v+gTa+ v+kaGrk+elayq+ak
VIMSS3243279 19 DLIDIIYNIAPYDTPFMSAIGKGVATAITHEWQTDELRQPGKNTRVEGEDATIKAGSFTTMLNNYCQISDETLQVTGTADRVKKAGRKNELAYQLAK 115
89***********************************777********************************************************* PP
DUF5309 98 klkElkrdmEyalingnkasvsgskttarkmgGllawvksnnsvgtag.......sggatdGtqrafteallkdvlqklyqaGgneklvlvspelke 187
k+kElk dmEyal+++ +a+v++++tt+ +m++++a++k+n s g++g s++ t+G+ r +te++l ++ ++++++Gg+ + + +s+++k+
VIMSS3243279 116 KSKELKLDMEYALVGAPQAKVQRNTTTPGQMANIFAYYKTNGSLGANGvapvgdgSNTGTAGDLRLLTEDMLLNASESIWRNGGQANSIQTSSSIKK 212
************************************************9999655555*************************************** PP
DUF5309 188 vfstf..tarvevtaeakdnkigasvdvyesdfGkvkivlnrvmparkvfvidpaylklayLrpiqeeelaktGdsekgvvitEltLkvknekalav 282
++s+ + +e+t +a+dn+i ++vdvyesdfGk++i +nr+++++++fv+dp++++l+yLrp++++elaktGdsek+++++E+t +v+nek++a+
VIMSS3243279 213 AISKNmkGRATEITLDASDNRIAQTVDVYESDFGKYTIRANRWFHENTLFVFDPKMHSLCYLRPFFQHELAKTGDSEKRQLLVEYTFRVNNEKSGAL 309
999877778899999********************************************************************************98 PP
DUF5309 283 i 283
i
VIMSS3243279 310 I 310
7 PP
Or compare VIMSS3243279 to CDD or PaperBLAST