VIMSS3249291 has 374 amino acids
Query: DUF5309 [M=283]
Accession: PF17236.6
Description: Family of unknown function (DUF5309)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.1e-37 113.7 0.1 6.5e-35 106.8 0.0 2.3 2 VIMSS3249291
Domain annotation for each sequence (and alignments):
>> VIMSS3249291
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 4.9 0.1 0.00071 0.00071 16 46 .. 30 61 .. 15 128 .. 0.67
2 ! 106.8 0.0 6.5e-35 6.5e-35 46 278 .. 133 360 .. 126 366 .. 0.88
Alignments for each domain:
== domain 1 score: 4.9 bits; conditional E-value: 0.00071
DUF5309 16 llsligk.ekaksttveWqedeLnpdaanaqv 46
l lig ++ ++t++eWq d Ln+d+ + +
VIMSS3249291 30 LFGLIGVgDALTQTKFEWQNDYLNSDTGIVKT 61
4567777678899**********887766544 PP
== domain 2 score: 106.8 bits; conditional E-value: 6.5e-35
DUF5309 46 vEGdeatvk.aesararlgNytqIfkksvsvSgTaeavnkaGrkdelayqvakklkElkrdmEyalingnkasvsgskttarkmgGllawvksnnsv 141
EG++a k + ++r N qIf++ +svS+T+++vn+ G+++el+yqv+++l+E+ r+ + +li g + gs t++r++gGl+a+ + s
VIMSS3249291 133 PEGEDAFRKnEINDRLVSHNFSQIFSRYASVSRTQQQVNTYGVSNELDYQVNLRLQEMIREANTSLIYGRR--NGGSPTQPRTTGGLFAFTGIEGSH 227
6888875550555666667*************************************************999..889999*************99999 PP
DUF5309 142 gtagsggatdGtqrafteallkdvlqklyqaGgneklvlvspelkevfstftarvevtaeakdnkigasvdvyesdf..Gkv.kivlnrvmparkvf 235
+++ + ++ + l+d+++++++ Gg+ +++l+ p++ + +++ + ++ +d g ++ +++sd G + ++v++ +mp++ ++
VIMSS3249291 228 KQD-------FKGNEIAAKPLNDAVEQVFTRGGSANTILCGPNIARQITKLGGDTI-RTTRQDTAAGYQILSFVSDLpgGAIsSVVVDLNMPKDRAL 316
887.......355688999***************************9999644444.34678999**********987677636999********** PP
DUF5309 236 vidpaylklayLrpiqeeelaktG.dsekgvvitEltLkvknek 278
++d++++k +yL pi +++ +++G d+ ++v+ +E++ +vkn k
VIMSS3249291 317 LLDTDKVKARYLTPIYDQDATPNGaDYFSRVIRGEFGFEVKNAK 360
*****************99888875899**************87 PP
Or compare VIMSS3249291 to CDD or PaperBLAST