PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS352836 to PF19904 (DUF6377)

VIMSS352836 has 547 amino acids

Query:       DUF6377  [M=247]
Accession:   PF19904.3
Description: Domain of unknown function (DUF6377)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.2e-103  332.1  15.5   2.1e-103  331.2  15.5    1.5  1  VIMSS352836  


Domain annotation for each sequence (and alignments):
>> VIMSS352836  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.2  15.5  2.1e-103  2.1e-103       1     247 []     257     511 ..     257     511 .. 0.98

  Alignments for each domain:
  == domain 1  score: 331.2 bits;  conditional E-value: 2.1e-103
      DUF6377   1 DiksatkenaalqeLaellyeegdierAykYikvaledakfynarlRkleiseilpiIekayqekeekqkrkllillilislllllllvllviiyrql 98 
                  Di+sa+k++a+l++La+llye+gd+erAy+Y++++++ +kfynarlR+++ +++l++I+k+yq+++ekq+++l+ +l+li++ll+ll+ +l +iyrq+
  VIMSS352836 257 DIRSAIKDHASLWMLAQLLYENGDMERAYQYMRFSWNATKFYNARLRSWQSADVLSLIDKTYQAMIEKQNDRLQQYLVLITALLVLLIGALGYIYRQM 354
                  9************************************************************************************************* PP

      DUF6377  99 kklkkarkelkeaneqlkelnee.neq........nekLseankikeeyigrflnlcseyidklekyrksverklkakqldellkllkssklieeele 187
                  kkl+ ar++l++an+ql++lnee + q        n++Lse+n+ikeeyi+rf++lcs+yi++l++yr++v++k++a+q++ellk+++s++ ++eele
  VIMSS352836 355 KKLAVARNHLQTANHQLNQLNEElQ-QmnacltstNAELSESNQIKEEYIARFIKLCSTYINRLDAYRRMVNKKVSAGQIAELLKITRSQDALDEELE 451
                  ***********************61.335668889*************************************************************** PP

      DUF6377 188 elyknFDkaFLklfPdFveefNaLLkeeeqielkkgelLnteLRIfALiRLGitdsekIA 247
                  ely+nFD+aFL+lfPdFv++fNaLL+++eqi lkk+elLnteLRIfALiRLGi+ds++IA
  VIMSS352836 452 ELYANFDTAFLHLFPDFVKKFNALLQDNEQIILKKDELLNTELRIFALIRLGIEDSSQIA 511
                  ***********************************************************9 PP



Or compare VIMSS352836 to CDD or PaperBLAST