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Align XP_641923.1 to PF20173 (ZnF_RZ-type)

XP_641923.1 has 1793 amino acids

Query:       ZnF_RZ-type  [M=54]
Accession:   PF20173.2
Description: RZ type zinc finger domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-23   67.2   5.1    3.9e-23   67.2   5.1    4.7  5  XP_641923.1  


Domain annotation for each sequence (and alignments):
>> XP_641923.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.9   7.1         1         1      24      33 ..    1381    1389 ..    1371    1395 .. 0.57
   2 ?   -7.3  10.6         1         1      13      29 ..    1524    1540 ..    1514    1555 .. 0.81
   3 ?  -14.0  12.2         1         1      15      37 ..    1599    1619 ..    1581    1621 .. 0.70
   4 ?    0.5   0.0     0.027     0.027      27      41 ..    1666    1680 ..    1641    1684 .. 0.73
   5 !   67.2   5.1   3.9e-23   3.9e-23       2      53 ..    1719    1771 ..    1717    1772 .. 0.92

  Alignments for each domain:
  == domain 1  score: -10.9 bits;  conditional E-value: 1
  ZnF_RZ-type   24 eCGrameesr 33  
                    CG++ ++ +
  XP_641923.1 1381 KCGHTCKK-T 1389
                   56666543.3 PP

  == domain 2  score: -7.3 bits;  conditional E-value: 1
  ZnF_RZ-type   13 kCpnGHpYvigeCGram 29  
                   +C+ +H +  g CG+  
  XP_641923.1 1524 RCNSQHACSSGSCGDCK 1540
                   7*************864 PP

  == domain 3  score: -14.0 bits;  conditional E-value: 1
  ZnF_RZ-type   15 pnGHpYvigeCGrameesrCpeC 37  
                   p+ H + ig CG+   +s C  C
  XP_641923.1 1599 PCKHQC-IGLCGEKC-VSICRIC 1619
                   556665.78888765.4667666 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.027
  ZnF_RZ-type   27 rameesrCpeCgatI 41  
                   + +  ++Cp C+  I
  XP_641923.1 1666 GKIVHKKCPSCNMII 1680
                   566788999998765 PP

  == domain 5  score: 67.2 bits;  conditional E-value: 3.9e-23
  ZnF_RZ-type    2 akafkg.tghwYkCpnGHpYvigeCGrameesrCpeCgatIGGeshnlaagnt 53  
                   +ka+ g +ghw+ C+n H+Y+igeCG+am+ ++C eC+a++GG++h l  +n+
  XP_641923.1 1719 VKAMGGaAGHWFVCENKHTYYIGECGGAMQIGNCIECKAKVGGTNHSLLPNNK 1771
                   45666689****************************************99997 PP



Or compare XP_641923.1 to CDD or PaperBLAST