PaperBLAST – Find papers about a protein or its homologs

 

Align C3VER8 to PF20238 (BIM1-like_dom)

C3VER8 has 206 amino acids

Query:       BIM1-like_dom  [M=140]
Accession:   PF20238.2
Description: Copper acquisition factor BIM1-like
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-40  123.9   0.6    4.5e-40  123.6   0.6    1.2  1  C3VER8    


Domain annotation for each sequence (and alignments):
>> C3VER8  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6   0.6   4.5e-40   4.5e-40       1     139 [.      17     162 ..      17     163 .. 0.91

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 4.5e-40
  BIM1-like_dom   1 sahfallyPpsrgfdedk...entaPCGgf..asvgnrtefpltggav.lllsshpsanvavrlslgnptsnsdfntlleppvvqetgaGhfClpk 90 
                    +ahf+++yP+ rg++ ++   + ++PC+++  +s++nrt +pltgg++ l l+ h+++++ v+l+lg  t+  +fn++l++++++etg+G++C+p+
         C3VER8  17 NAHFSIEYPEMRGDSFATgasQYIYPCANVnqTSATNRTIWPLTGGSLnLDLH-HQWTYYFVNLGLG--TNYPTFNISLTQQLLNETGNGTLCMPH 109
                    79***********99888878999******9888999***********99999.*************..55569********************** PP

  BIM1-like_dom  91 vdlpss....aGtnatlqvvysge.g.alYqCadvtfvesasaksassstCfnst 139
                    + lp++    +G+na++qvv+ g+ g alY+Cad+tf+  ++a++ s s+C ns+
         C3VER8 110 IVLPAGlaisEGQNASIQVVTVGHtGsALYNCADITFS--SAATTLSGSSCANSS 162
                    *****9***67**********7775358**********..4445699******98 PP



Or compare C3VER8 to CDD or PaperBLAST