PaperBLAST – Find papers about a protein or its homologs

 

Align XP_001395826.1 to PF20238 (BIM1-like_dom)

XP_001395826.1 has 230 amino acids

Query:       BIM1-like_dom  [M=140]
Accession:   PF20238.2
Description: Copper acquisition factor BIM1-like
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-38  117.2   0.4    6.1e-38  116.6   0.4    1.3  1  XP_001395826.1  


Domain annotation for each sequence (and alignments):
>> XP_001395826.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.4   6.1e-38   6.1e-38       2     140 .]      17     162 ..      16     162 .. 0.93

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 6.1e-38
   BIM1-like_dom   2 ahfallyPpsrgfdedkentaPCGgfasvgnrtefpltggav.lllss.hpsanvavrlslgn.ptsnsdfntlleppvvqetgaGhfClpkvdl 93 
                     ahf+l+yP+sr  +e++++++PCGg+a+++nrt+ +++ g++ + ls+ h+++ v+v l+lg+ p +  ++n++l +++  + g G fClp++++
  XP_001395826.1  17 AHFELKYPTSRDGSEEEMTQFPCGGAAQSSNRTQVSISAGSFpVALSMgHSQTAVEVLLALGSdPGT--NYNITLHQTFEIQ-GLGAFCLPHIKF 108
                     9*************************************************************86666..9999988888888.************ PP

   BIM1-like_dom  94 pss.......aGtnatlqvvysge..galYqCadvtfvesasaksassstCfnstg 140
                      +s       +G+nat+qv  +g+  g lY+Cad++f+  ++ + +++s+C+n+tg
  XP_001395826.1 109 DESilgtnitDGMNATVQVQSNGDptGGLYACADIQFS--STVDYEEPSSCSNNTG 162
                     **9******66**********9998845**********..7777899*******96 PP



Or compare XP_001395826.1 to CDD or PaperBLAST