PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3592285 to TIGR00001

VIMSS3592285 has 66 amino acids

Query:       TIGR00001  [M=63]
Accession:   TIGR00001
Description: rpmI_bact: ribosomal protein bL35
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-26   76.2  10.0      1e-25   76.1  10.0    1.0  1  VIMSS3592285  


Domain annotation for each sequence (and alignments):
>> VIMSS3592285  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1  10.0     1e-25     1e-25       1      61 [.       2      62 ..       2      64 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 1e-25
     TIGR00001  1 pKmKTkkaaaKRFkvtgsGkikrkkagkrHlltkKsskrkRqLrkkalvsksdlkrvkllL 61
                  pK KT++a+aKRFk tgsG +kr +a+++H +  K++k++R+Lrk ++v+++d kr+k++L
  VIMSS3592285  2 PKQKTHRASAKRFKRTGSGGLKRFRAYTSHRFHGKTKKQRRHLRKAGMVHAGDFKRIKSML 62
                  9***********************************************************9 PP



Or compare VIMSS3592285 to CDD or PaperBLAST