PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF01861 (DUF43)

PF01861.16 hits 15 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

MJ1273 conserved hypothetical protein (NCBI ptt file) from Methanocaldococcus jannaschii DSM 2661
Q58669 N(4)-bis(aminopropyl)spermidine synthase from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Aligns to 105:349 / 350 (70.0%), covers 100.0% of PF01861, 414.3 bits

Q8U1U4 N(4)-bis(aminopropyl)spermidine synthase from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
PF1111 hypothetical protein (NCBI ptt file) from Pyrococcus furiosus DSM 3638
Aligns to 105:348 / 349 (69.9%), covers 100.0% of PF01861, 411.7 bits

BPSA_THEKO / Q5JIZ3 N(4)-bis(aminopropyl)spermidine synthase; Branched-chain polyamine synthase A; EC 2.5.1.128 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see paper)
Q5JIZ3 N4-bis(aminopropyl)spermidine synthase (EC 2.5.1.128) from Thermococcus kodakarensis (see paper)
TK1691 hypothetical protein (NCBI) from Thermococcus kodakaraensis KOD1
Aligns to 106:350 / 351 (69.8%), covers 100.0% of PF01861, 400.3 bits

O67635 N(4)-bis(aminopropyl)spermidine synthase from Aquifex aeolicus (strain VF5)
Aligns to 110:354 / 355 (69.0%), covers 100.0% of PF01861, 386.5 bits

AF1611 conserved hypothetical protein (NCBI ptt file) from Archaeoglobus fulgidus DSM 4304
O28662 N(4)-bis(aminopropyl)spermidine synthase from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Aligns to 123:368 / 371 (66.3%), covers 99.6% of PF01861, 372.2 bits

Q72L89 N(4)-bis(aminopropyl)spermidine synthase from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
TTC0171 No description from Thermus thermophilus HB27
Aligns to 113:352 / 353 (68.0%), covers 98.8% of PF01861, 366.7 bits

Q58088 Uncharacterized protein MJ0675 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
MJ0675 conserved hypothetical protein (NCBI ptt file) from Methanocaldococcus jannaschii DSM 2661
Aligns to 129:379 / 391 (64.2%), covers 99.6% of PF01861, 345.5 bits

TTE1898 predicted methyltransferases (NCBI ptt file) from Thermoanaerobacter tengcongensis MB4
Aligns to 110:352 / 358 (67.9%), covers 99.2% of PF01861, 303.0 bits

MMP1657 conserved hypothetical protein (NCBI) from Methanococcus maripaludis S2
Q6LWQ1 DUF43 domain-containing protein from Methanococcus maripaludis (strain S2 / LL)
Aligns to 128:378 / 390 (64.4%), covers 99.2% of PF01861, 256.6 bits

Q2IYF9 DUF43 domain-containing protein from Rhodopseudomonas palustris (strain HaA2)
Aligns to 112:314 / 383 (53.0%), covers 74.9% of PF01861, 151.4 bits

PP5395 conserved hypothetical protein (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 9:265 / 281 (91.5%), covers 79.4% of PF01861, 66.5 bits

NGO1860 putative DNA methylase (NCBI) from Neisseria gonorrhoeae FA 1090
Aligns to 30:155 / 189 (66.7%), covers 37.0% of PF01861, 25.6 bits

YP_001930381 Protein of unknown function methylase putative (RefSeq) from Sulfurihydrogenibium sp. YO3AOP1
Aligns to 21:127 / 157 (68.2%), covers 33.7% of PF01861, 24.7 bits

Q9K1J6 Uncharacterized protein from Neisseria meningitidis serogroup B (strain MC58)
Aligns to 23:149 / 189 (67.2%), covers 37.0% of PF01861, 22.1 bits

CMKMT_ARATH / F4JNX3 Calmodulin-lysine N-methyltransferase; CLNMT; CaM KMT; EC 2.1.1.60 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT4G35987 hypothetical protein (RefSeq) from Arabidopsis thaliana
NP_680769 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein from Arabidopsis thaliana
Aligns to 118:266 / 304 (49.0%), covers 47.7% of PF01861, 21.7 bits

Or search for genetic data about PF01861 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory