Family Search for PF01894 (UPF0047)
PF01894.17 hits 22 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
TTE2189 conserved hypothetical protein (NCBI ptt file) from Thermoanaerobacter tengcongensis MB4
Aligns to 16:127 / 130 (86.2%), covers 100.0% of PF01894, 155.5 bits
Q9X2I5 thiamine phosphate synthase (EC 2.5.1.3) from Thermotoga maritima (see paper)
Aligns to 17:129 / 132 (85.6%), covers 100.0% of PF01894, 153.7 bits
Q8U3C6 thiamine phosphate synthase (EC 2.5.1.3) from Pyrococcus furiosus (see paper)
Aligns to 17:130 / 133 (85.7%), covers 100.0% of PF01894, 146.0 bits
BCAM0378 hypothetical upf0047 protein sll1880 (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 19:136 / 139 (84.9%), covers 99.1% of PF01894, 139.9 bits
MA3192 conserved hypothetical protein (NCBI ptt file) from Methanosarcina acetivorans C2A
Aligns to 15:128 / 132 (86.4%), covers 100.0% of PF01894, 138.9 bits
DVU0499 conserved hypothetical protein TIGR00149 (TIGR) from Desulfovibrio vulgaris Hildenborough
Aligns to 16:128 / 131 (86.3%), covers 99.1% of PF01894, 132.3 bits
EHI_169840 hypothetical protein, conserved from Entamoeba histolytica HM-1:IMSS
Aligns to 25:144 / 148 (81.1%), covers 98.3% of PF01894, 131.3 bits
ST2072 134aa long conserved hypothetical protein (NCBI ptt file) from Sulfolobus tokodaii str. 7
WP_010980147 YjbQ family protein from Sulfurisphaera tokodaii str. 7
Aligns to 20:131 / 134 (83.6%), covers 99.1% of PF01894, 130.9 bits
- "Hot cores" in proteins: comparative analysis of the apolar contact area in structures from hyper/thermophilic and mesophilic organisms
Paiardini, BMC structural biology 2008 - “...tokodaii 2.00 1VMH A a/b C. acetobutylicum 1.31 0.69 42 Metal Binding Protein Hypothetical Protein St2072 22 1VPE 0 a/b Thermotoga maritima 2.00 1HDI A a/b Sus scrofa 1.80 0.20 47 Transferase Phosphoglycerate Kinase 23 1XGS A mainly a Pyrococcus furiosus 1.75 1B6A 0 mainly a...”
- “...tokodaii 2.00 1VMH A a/b Clostridium acetobutylicum 1.31 0.69 42 Metal Binding Protein Hypothetical Protein St2072 33 1VFF A a/b Pyrococcus horikoshii 2.55 1E4I A a/b Bacillus polymyxa 2.00 0.55 32 Hydrolase B-Glucosidase 34 1VPE 0 a/b Thermotoga maritima 2.00 1HDI A a/b Sus scrofa 1.80...”
- Crystal structure of the hypothetical protein ST2072 from Sulfolobus tokodaii
Tanaka, Proteins 2005 (PubMed)- “...of the Hypothetical Protein ST2072 From Sulfolobus tokodaii Yoshikazu Tanaka,1,2 Kouhei Tsumoto,1,3* Eiki Tanabe,1 Yoshiaki Yasutake,2 Naoki Sakai,2 Min Yao,2,4...”
- “...RIKEN Harima Institute/SPring-8, Hyogo, Japan Introduction. ST2072 is a hypothetical function unknown protein from the thermophilic archaeon Sulfolobus...”
- Crystal structure of the hypothetical protein ST2072 from Sulfolobus tokodaii.
Tanaka, Proteins 2005 (PubMed)- GeneRIF: xray diffraction of the recombinant protein.
BH3498 hypothetical protein (NCBI) from Bacillus halodurans C-125
Aligns to 16:130 / 133 (86.5%), covers 99.1% of PF01894, 129.6 bits
SPAC4A8.02c conserved protein (broad species distribution) (RefSeq) from Schizosaccharomyces pombe
Aligns to 19:136 / 142 (83.1%), covers 98.3% of PF01894, 127.4 bits
TTE1571 conserved hypothetical protein (NCBI ptt file) from Thermoanaerobacter tengcongensis MB4
Aligns to 20:135 / 138 (84.1%), covers 100.0% of PF01894, 125.7 bits
A4XHT6 Uncharacterized protein from Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331)
Aligns to 20:135 / 138 (84.1%), covers 100.0% of PF01894, 125.1 bits
Q9WZI2 thiamine phosphate synthase (EC 2.5.1.3) from Thermotoga maritima (see paper)
Aligns to 20:136 / 139 (84.2%), covers 100.0% of PF01894, 120.8 bits
PA5286 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 18:136 / 141 (84.4%), covers 97.4% of PF01894, 119.7 bits
- Full Transcriptomic Response of Pseudomonas aeruginosa to an Inulin-Derived Fructooligosaccharide
Rubio-Gómez, Frontiers in microbiology 2020 - “...glpT Glycerol-3-phosphate transporter 1.0 0.000 0.9 0.000 PA5285 sutA Uncharacterized protein 0.6 0.003 0.6 0.002 PA5286 yjbQ Uncharacterized protein 0.7 0.002 0.7 0.003 PA5301 pauR Polyamine catabolic process 0.7 0.002 0.6 0.002 PA5315 rpmG 50S ribosomal protein L33 0.6 0.002 0.6 0.001 PA5332 crc Catabolite repression...”
- “...1.2 0.000 PA5255 algQ Alginate regulatory protein 0.6 0.007 PA5285 sutA Uncharacterized protein 0.5 0.006 PA5286 yjbQ Uncharacterized protein 0.7 0.000 PA5288 glnK Nitrogen regulatory protein 0.6 0.003 PA5301 pauR Polyamine catabolic process 0.9 0.000 PA5315 rpmG 50S ribosomal protein L33 0.7 0.000 PA5332 crc Catabolite...”
- Protein-to-mRNA ratios are conserved between Pseudomonas aeruginosa strains
Kwon, Journal of proteome research 2014 - “...17.7 367.0 406.0 peptide methionine sulfoxide reductase PA5201 28.5 7.3 1453.0 1523.5 conserved hypothetical protein PA5286 9.4 3.6 818.0 1366.5 conserved hypothetical protein PA5343 8.3 3.0 193.5 246.5 hypothetical protein PA5535 0.0 17.1 42.0 42.5 conserved hypothetical protein a The protein abundance value represents the average...”
Q97VS8 thiamine phosphate synthase (EC 2.5.1.3) from Saccharolobus solfataricus (see paper)
Aligns to 20:134 / 137 (83.9%), covers 99.1% of PF01894, 119.5 bits
YjbQ / b4056 UPF0047 protein YjbQ from Escherichia coli K-12 substr. MG1655 (see 4 papers)
b4056 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
ECs5038 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 18:135 / 138 (85.5%), covers 97.4% of PF01894, 119.2 bits
SG2130 hypothetical protein (NCBI) from Sodalis glossinidius str. 'morsitans'
Aligns to 17:134 / 137 (86.1%), covers 96.5% of PF01894, 117.5 bits
STM4250 putative cytoplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 18:135 / 138 (85.5%), covers 97.4% of PF01894, 115.0 bits
TTC1351 No description from Thermus thermophilus HB27
Aligns to 18:128 / 129 (86.0%), covers 99.1% of PF01894, 110.8 bits
YP_001997537 protein of unknown function UPF0047 (RefSeq) from Chloroherpeton thalassium ATCC 35110
Aligns to 19:135 / 138 (84.8%), covers 99.1% of PF01894, 96.4 bits
MAP_1076 YjbQ family protein from Mycobacterium avium subsp. paratuberculosis K-10
Aligns to 13:126 / 129 (88.4%), covers 98.3% of PF01894, 87.9 bits
Rv2556c hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
Aligns to 13:126 / 129 (88.4%), covers 98.3% of PF01894, 87.1 bits
- Whole genome sequencing, analyses of drug resistance-conferring mutations, and correlation with transmission of Mycobacterium tuberculosis carrying katG-S315T in Hanoi, Vietnam
Hang, Scientific reports 2019 - “...Rv2143, Rv2164c, Rv2177c, Rv2190c, Rv2219A, Rv2228c, Rv2254c, Rv2256a, Rv2286c, Rv2314c, Rv2319c, Rv2327, Rv2424c, Rv2456c, Rv2532c, Rv2556c, Rv2567, Rv2621c, Rv2630, Rv2638, Rv2656c, Rv2668, Rv2669, Rv2729c, Rv2733c, Rv2792c, Rv2798c, Rv2851c, Rv2864c, Rv2893, Rv2897c, Rv2951c, Rv2974c, Rv2994, Rv3027c, Rv3060c, Rv3064c, Rv3074, Rv3104c, Rv3169, Rv3193c, Rv3201c, Rv3208, Rv3216, Rv3218, Rv3230c,...”
- Application of Distributive Conjugal DNA Transfer in Mycobacterium smegmatis To Establish a Genome-Wide Synthetic Genetic Array
Judd, Journal of bacteriology 2017 - “...Synthetic lethal H2O2 Synthetic lethal -- Rv0043c Rv2556c Rv2256c Synthetic Synthetic Synthetic Synthetic Synthetic sick Synthetic sick None Synthetic lethal...”
- Proteomic definition of the cell wall of Mycobacterium tuberculosis
Wolfe, Journal of proteome research 2010 - “...CONSERVED HYPOTHETICAL PROTEIN 10 V D Rv2518c lppS PROBABLE CONSERVED LIPOPROTEIN LPPS 3 II.C.1 D Rv2556c Rv2556c CONSERVED HYPOTHETICAL PROTEIN 10 V D Rv2712c Rv2712c HYPOTHETICAL PROTEIN 16 VI A Rv2720 leXA REPRESSOR LEXA 9 I.J.1 D Rv2789c fadE21 PROBABLE ACYL-CoA DEHYDROGENASE FADE21 1 I.A.3 A...”
Or search for genetic data about PF01894 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory