PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF01894 (UPF0047)

PF01894 hits 24 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

TTE2189 conserved hypothetical protein (NCBI ptt file) from Thermoanaerobacter tengcongensis MB4
Aligns to 16:127 / 130 (86.2%), covers 100.0% of PF01894, 162.4 bits

Q9X2I5 thiamine phosphate synthase (EC 2.5.1.3) from Thermotoga maritima (see paper)
Aligns to 17:129 / 132 (85.6%), covers 100.0% of PF01894, 162.0 bits

Q8U3C6 thiamine phosphate synthase (EC 2.5.1.3) from Pyrococcus furiosus (see paper)
Aligns to 17:130 / 133 (85.7%), covers 100.0% of PF01894, 147.8 bits

BCAM0378 hypothetical upf0047 protein sll1880 (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 19:136 / 139 (84.9%), covers 99.1% of PF01894, 145.6 bits

Q65FN0 Conserved protein YugU from Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46)
Aligns to 17:130 / 133 (85.7%), covers 100.0% of PF01894, 142.9 bits

MA3192 conserved hypothetical protein (NCBI ptt file) from Methanosarcina acetivorans C2A
Aligns to 15:128 / 132 (86.4%), covers 100.0% of PF01894, 142.6 bits

BH3498 hypothetical protein (NCBI) from Bacillus halodurans C-125
Aligns to 16:130 / 133 (86.5%), covers 99.1% of PF01894, 140.7 bits

DVU0499 conserved hypothetical protein TIGR00149 (TIGR) from Desulfovibrio vulgaris Hildenborough
Aligns to 16:128 / 131 (86.3%), covers 99.1% of PF01894, 139.1 bits

EHI_169840 hypothetical protein, conserved from Entamoeba histolytica HM-1:IMSS
Aligns to 25:144 / 148 (81.1%), covers 98.3% of PF01894, 137.5 bits

SPAC4A8.02c conserved protein (broad species distribution) (RefSeq) from Schizosaccharomyces pombe
Aligns to 19:136 / 142 (83.1%), covers 99.1% of PF01894, 135.2 bits

1ve0A / Q96YV5 Crystal structure of uncharacterized protein st2072 from sulfolobus tokodaii
ST2072 134aa long conserved hypothetical protein (NCBI ptt file) from Sulfolobus tokodaii str. 7
WP_010980147 secondary thiamine-phosphate synthase enzyme YjbQ from Sulfurisphaera ohwakuensis
Aligns to 20:131 / 134 (83.6%), covers 99.1% of PF01894, 134.8 bits

TTE1571 conserved hypothetical protein (NCBI ptt file) from Thermoanaerobacter tengcongensis MB4
Aligns to 20:135 / 138 (84.1%), covers 100.0% of PF01894, 130.5 bits

A4XHT6 Secondary thiamine-phosphate synthase enzyme from Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331)
Aligns to 20:135 / 138 (84.1%), covers 100.0% of PF01894, 129.7 bits

PA5286 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 18:136 / 141 (84.4%), covers 98.3% of PF01894, 127.3 bits

Q97VS8 thiamine phosphate synthase (EC 2.5.1.3) from Saccharolobus solfataricus (see paper)
Aligns to 20:134 / 137 (83.9%), covers 100.0% of PF01894, 126.5 bits

YjbQ / b4056 UPF0047 protein YjbQ from Escherichia coli K-12 substr. MG1655 (see 4 papers)
b4056 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
ECs5038 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 18:135 / 138 (85.5%), covers 98.3% of PF01894, 125.2 bits

Q9WZI2 thiamine phosphate synthase (EC 2.5.1.3) from Thermotoga maritima (see paper)
Aligns to 20:136 / 139 (84.2%), covers 100.0% of PF01894, 123.7 bits

SG2130 hypothetical protein (NCBI) from Sodalis glossinidius str. 'morsitans'
Aligns to 17:134 / 137 (86.1%), covers 97.4% of PF01894, 122.8 bits

STM4250 putative cytoplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 18:135 / 138 (85.5%), covers 98.3% of PF01894, 122.1 bits

TTC1351 No description from Thermus thermophilus HB27
Aligns to 18:128 / 129 (86.0%), covers 99.1% of PF01894, 118.0 bits

YP_001997537 protein of unknown function UPF0047 (RefSeq) from Chloroherpeton thalassium ATCC 35110
Aligns to 19:135 / 138 (84.8%), covers 99.1% of PF01894, 101.9 bits

Rv2556c hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
Aligns to 13:126 / 129 (88.4%), covers 98.3% of PF01894, 94.8 bits

P9WFP9 UPF0047 protein Rv2556c from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Aligns to 17:130 / 133 (85.7%), covers 98.3% of PF01894, 94.6 bits

MAP_1076 secondary thiamine-phosphate synthase enzyme YjbQ from Mycobacterium avium subsp. paratuberculosis K-10
Aligns to 13:126 / 129 (88.4%), covers 97.4% of PF01894, 94.6 bits

Or search for genetic data about PF01894 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory