Family Search for PF01904 (DUF72)
PF01904 hits 15 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
PP_3266 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 66:331 / 350 (76.0%), covers 99.5% of PF01904, 243.7 bits
PA2157 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 24:289 / 312 (85.3%), covers 99.5% of PF01904, 238.1 bits
- Evolved resistance to colistin and its loss due to genetic reversion in Pseudomonas aeruginosa
Lee, Scientific reports 2016 - “...a ferrichrome receptor and an outer membrane receptor, respectively, which are involved in iron transport. PA2157 and PA5088 were thought to encode hypothetical proteins. For P155R-rev, the five genetic mutations found in P155R were absent. Unlike the P5 isogenic mutants, the mutations found in P155R were...”
- “...in PA4406 [ lpxC ]) among 13 genes in P5R, and two mutations (Ala76Asp in PA2157 and Leu167Pro in PA4777 [ pmrB ]) among five genes in P155R were predicted to be deleterious ( Tables 1 and 2 ). The Val260Gly substitution in PhoQ of P5R...”
- Analysis of the Pseudomonas aeruginosa regulon controlled by the sensor kinase KinB and sigma factor RpoN
Damron, Journal of bacteriology 2012 - “...PA2149 PA2150 PA2151 PA2152 PA2153 PA2154 PA2155 PA2156 PA2157 PA2158 PA2159 PA2160 PA2161 PA2162 PA2163 PA2164 PA2165 PA2167 PA2168 PA2169 algW algC algB lptF...”
- A eukaryotic-type signalling system of Pseudomonas aeruginosa contributes to oxidative stress resistance, intracellular survival and virulence
Goldová, BMC genomics 2011 - “...3.46 0.041 CHP 7.0 3.6 5.2 3.4 PA2156 2.40 0.001 CHP 3.6 2.4 2.4 2.4 PA2157 4.03 0.002 HP 6.2 3.4 4.2 3.8 PA2158 4.51 0.019 Pr. alcohol dehydrogenase (Zn-dependent) (Putative enzymes) 7.9 4.1 5.7 4.0 PA2159 a 2.89 0.062 CHP 5.9 3.2 4.4 3.7 PA2161...”
- A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance
Salunkhe, Journal of bacteriology 2005 - “...California, Berkeley PA2067 PA2068 PA2069 PA2080 PA2143 PA2146 PA2157 PA2159 PA2165 PA2166 PA2171 PA2172 PA2180 PA2190 PA2193 PA2194 PA2195 PA2274 PA2300 PA2305...”
- Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: a transcriptome analysis
Schuster, Journal of bacteriology 2003 - “...PA2144 PA2146 PA2147 PA2148 PA2151 PA2152 PA2153 PA2156 PA2157 PA2158 PA2159 PA2160 PA2161 PA2163 PA2164 PA2165 PA2166 PA2167 PA2169 PA2170 PA2171 PA2172...”
MSMEG_3593 hypothetical protein from Mycobacterium smegmatis str. MC2 155
Aligns to 19:238 / 242 (90.9%), covers 100.0% of PF01904, 224.5 bits
LMRG_01842 hypothetical protein from Listeria monocytogenes 10403S
lmo2406 similar to B. subtilis YunF protein from Listeria monocytogenes EGD-e
Aligns to 14:262 / 280 (88.9%), covers 96.8% of PF01904, 219.2 bits
- Listeria monocytogenes σA Is Sufficient to Survive Gallbladder Bile Exposure
Boonmee, Frontiers in microbiology 2019 - “...0.00 LMRG_01585 lmo2247 LMRG_01585-LMRG_01587 Xidoreductase of aldo/keto reductase family, subgroup 2, glyoxal reductase 2.09 0.01 LMRG_01842 lmo2406 Hypothetical protein 2.38 0.00 LMRG_02144 lmo2600 LMRG_02142-LMRG_02144 ATPase component of general energizing module of ECF transporters 2.40 0.00 LMRG_02241 lmo2694 Arginine decarboxylase/Lysine decarboxylase 2.14 0.00 LMRG_02276 lmo0853 LMRG_02275-LMRG_02277 QacE...”
- Listeria monocytogenes σA Is Sufficient to Survive Gallbladder Bile Exposure
Boonmee, Frontiers in microbiology 2019 - “...LMRG_01585 lmo2247 LMRG_01585-LMRG_01587 Xidoreductase of aldo/keto reductase family, subgroup 2, glyoxal reductase 2.09 0.01 LMRG_01842 lmo2406 Hypothetical protein 2.38 0.00 LMRG_02144 lmo2600 LMRG_02142-LMRG_02144 ATPase component of general energizing module of ECF transporters 2.40 0.00 LMRG_02241 lmo2694 Arginine decarboxylase/Lysine decarboxylase 2.14 0.00 LMRG_02276 lmo0853 LMRG_02275-LMRG_02277 QacE family...”
TM1631 conserved hypothetical protein from Thermotoga maritima MSB8
Aligns to 19:256 / 261 (91.2%), covers 100.0% of PF01904, 218.9 bits
- Role of magnesium ions in the reaction mechanism at the interface between Tm1631 protein and its DNA ligand
Ogrizek, Chemistry Central journal 2016 - “...10.1186/s13065-016-0188-6 Research Article Role of magnesium ions in the reaction mechanism at the interface between Tm1631 protein and its DNA ligand Ogrizek Mitja ogrizek.mitja@gmail.com Konc Janez konc@cmm.ki.si Bren Urban urban.bren@um.si http://orcid.org/0000-0001-5300-5997 Hodoek Milan milan@cmm.ki.si Janei Duanka dusanka.janezic@upr.si National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana, Slovenia...”
- “...) applies to the data made available in this article, unless otherwise stated. A protein, Tm1631 from the hyperthermophilic organism Thermotoga maritima belongs to a domain of unknown function protein family. It was predicted that Tm1631 binds with the DNA and that the Tm1631DNA complex is...”
- Structure-based function prediction of uncharacterized protein using binding sites comparison
Konc, PLoS computational biology 2013 - “...function. In this paper, we propose the function of a protein of unknown activity, the Tm1631 protein from Thermotoga maritima, by comparing its predicted binding site to a library containing thousands of candidate structures. The comparison revealed numerous similarities with nucleotide binding sites including specifically, a...”
- “...binding free energies, calculated from these models were in close agreement. We thus propose that Tm1631 is a DNA binding enzyme with endonuclease activity that recognizes DNA lesions in which at least two consecutive nucleotides are unpaired. Our approach is general, and can be applied to...”
SAV0921 hypothetical protein from Staphylococcus aureus subsp. aureus Mu50
Aligns to 16:266 / 282 (89.0%), covers 97.7% of PF01904, 210.4 bits
TTHA0758 hypothetical protein from Thermus thermophilus HB8
Aligns to 22:289 / 303 (88.4%), covers 99.5% of PF01904, 199.4 bits
bglu_1g13010 hypothetical protein from Burkholderia glumae BGR1
Aligns to 31:250 / 251 (87.6%), covers 96.3% of PF01904, 197.1 bits
LSA1659 Hypothetical protein from Lactobacillus sakei subsp. sakei 23K
Aligns to 16:262 / 281 (87.9%), covers 96.8% of PF01904, 196.2 bits
- Global transcriptome response in Lactobacillus sakei during growth on ribose
McLeod, BMC microbiology 2011 - “...-1.0 -1.6 LSA1644 lsa1644 Hypothetical protein 1.7 D LSA1649 lsa1649 Hypothetical extracellular protein precursor -0.5 LSA1659 lsa1659 Hypothetical protein -0.5 LSA1662 lsa1662 Hypothetical protein -1.0 -0.6 -0.7 LSA1663 lsa1663 Hypothetical protein -0.8 LSA1678 lsa1678 Hypothetical protein -0.6 LSA1680 lsa1680 Hypothetical protein -0.6 LSA1716 lsa1716 Hypothetical protein...”
1vpyA / Q838R9 Crystal structure of a duf72 family protein (ef0366) from enterococcus faecalis v583 at 2.52 a resolution
Aligns to 9:247 / 251 (95.2%), covers 95.9% of PF01904, 185.3 bits
VP1046 conserved hypothetical protein from Vibrio parahaemolyticus RIMD 2210633
Aligns to 24:264 / 289 (83.4%), covers 98.6% of PF01904, 184.4 bits
PSA3335_RS11510 DUF72 domain-containing protein from Pseudomonas savastanoi pv. savastanoi NCPPB 3335
Aligns to 23:261 / 287 (83.3%), covers 99.5% of PF01904, 182.3 bits
PA14_16730 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 23:262 / 288 (83.3%), covers 99.5% of PF01904, 178.5 bits
- Novel type III effectors in Pseudomonas aeruginosa
Burstein, mBio 2015 - “...of the newly discovered effectors suggested that pemA is part of an operon together with PA14_16730, a hypothetical protein whose gene has a start codon 18bp downstream of pemA . This operon structure is conserved across various Pseudomonas species (including P.aeruginosa , P.syringae , and P....”
PP1509 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 25:263 / 289 (82.7%), covers 99.5% of PF01904, 177.1 bits
YecE / b1868 DUF72 domain-containing protein YecE from Escherichia coli K-12 substr. MG1655 (see 3 papers)
yecE / RF|NP_416382 uncharacterized protein yecE from Escherichia coli K12 (see paper)
b1868 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 16:251 / 272 (86.8%), covers 94.5% of PF01904, 170.1 bits
Or search for genetic data about PF01904 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory