PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF01904 (DUF72)

PF01904.18 hits 15 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

L483_17350 DUF72 domain-containing protein from Pseudomonas putida H8234
Aligns to 21:286 / 305 (87.2%), covers 99.5% of PF01904, 234.3 bits

PP_3266 conserved hypothetical protein (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 66:331 / 350 (76.0%), covers 99.5% of PF01904, 234.0 bits

PA2157 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 24:289 / 312 (85.3%), covers 99.5% of PF01904, 226.2 bits

LMRG_01842 hypothetical protein (RefSeq) from Listeria monocytogenes 10403S
lmo2406 similar to B. subtilis YunF protein (NCBI ptt file) from Listeria monocytogenes EGD-e
Aligns to 14:262 / 280 (88.9%), covers 96.8% of PF01904, 215.0 bits

TM1631 conserved hypothetical protein (NCBI ptt file) from Thermotoga maritima MSB8
Aligns to 19:256 / 261 (91.2%), covers 100.0% of PF01904, 213.1 bits

MSMEG_3593 hypothetical protein (NCBI) from Mycobacterium smegmatis str. MC2 155
Aligns to 19:238 / 242 (90.9%), covers 99.5% of PF01904, 205.5 bits

SAV0921 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus Mu50
Aligns to 16:266 / 282 (89.0%), covers 97.2% of PF01904, 202.3 bits

TTHA0758 hypothetical protein (NCBI) from Thermus thermophilus HB8
Aligns to 22:289 / 303 (88.4%), covers 99.5% of PF01904, 197.9 bits

LSA1659 Hypothetical protein (NCBI) from Lactobacillus sakei subsp. sakei 23K
Aligns to 16:262 / 281 (87.9%), covers 96.8% of PF01904, 186.3 bits

PSA3335_RS11510 DUF72 domain-containing protein from Pseudomonas savastanoi pv. savastanoi NCPPB 3335
Aligns to 23:261 / 287 (83.3%), covers 99.5% of PF01904, 186.0 bits

WP_032074452 DUF72 domain-containing protein from Pseudomonas savastanoi pv. savastanoi
Aligns to 25:263 / 289 (82.7%), covers 99.5% of PF01904, 186.0 bits

bglu_1g13010 hypothetical protein (RefSeq) from Burkholderia glumae BGR1
Aligns to 31:250 / 251 (87.6%), covers 95.9% of PF01904, 184.6 bits

PA14_16730 hypothetical protein (NCBI) from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 23:262 / 288 (83.3%), covers 99.5% of PF01904, 176.8 bits

YecE / b1868 DUF72 domain-containing protein YecE from Escherichia coli K-12 substr. MG1655 (see 3 papers)
yecE / RF|NP_416382 uncharacterized protein yecE from Escherichia coli K12 (see paper)
b1868 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 16:251 / 272 (86.8%), covers 94.5% of PF01904, 174.6 bits

WP_011204911 DUF72 domain-containing protein from Burkholderia pseudomallei
Aligns to 105:374 / 387 (69.8%), covers 99.5% of PF01904, 151.6 bits

Or search for genetic data about PF01904 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory