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Family Search for PF01930 (Cas_Cas4)

PF01930 hits 65 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

MTH1085 conserved protein from Methanothermobacter thermautotrophicus str. Delta H
Aligns to 15:175 / 175 (92.0%), covers 99.4% of PF01930, 203.1 bits

Q8U1T6 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming) (EC 3.1.12.1) from Pyrococcus furiosus (see 2 papers)
PF1119 hypothetical protein from Pyrococcus furiosus DSM 3638
Aligns to 12:169 / 169 (93.5%), covers 98.8% of PF01930, 200.0 bits

TK0458 predicted exonuclease, RecB family from Thermococcus kodakaraensis KOD1
Aligns to 13:170 / 170 (92.9%), covers 99.4% of PF01930, 198.8 bits

MJ0377 conserved hypothetical protein from Methanocaldococcus jannaschii DSM 2661
Aligns to 12:170 / 170 (93.5%), covers 99.4% of PF01930, 196.8 bits

TTE2659 RecB family exonuclease from Thermoanaerobacter tengcongensis MB4
Aligns to 11:170 / 170 (94.1%), covers 99.4% of PF01930, 192.6 bits

PG2015 CRISPR-associated protein Cas4 from Porphyromonas gingivalis W83
Aligns to 5:166 / 170 (95.3%), covers 98.8% of PF01930, 189.0 bits

CD2977 hypothetical protein from Clostridium difficile 630
CD630_29770, CDIF630erm_03261 CRISPR-associated protein Cas4 from Clostridioides difficile 630
Aligns to 11:169 / 172 (92.4%), covers 99.4% of PF01930, 188.8 bits

NEQ021 NEQ021 from Nanoarchaeum equitans Kin4-M
Aligns to 5:166 / 168 (96.4%), covers 98.8% of PF01930, 183.7 bits

Dtur_0620 CRISPR-associated protein Cas4 from Dictyoglomus turgidum DSM 6724
Aligns to 8:168 / 168 (95.8%), covers 100.0% of PF01930, 179.2 bits

CG479_RS10980 CRISPR-associated protein Cas4 from Bacillus cytotoxicus
Aligns to 2:159 / 165 (95.8%), covers 98.8% of PF01930, 177.8 bits

HLASA_0865 CRISPR-associated protein Cas4 from Halanaeroarchaeum sulfurireducens
Aligns to 26:183 / 184 (85.9%), covers 100.0% of PF01930, 162.8 bits

CAS4_HALVD / D4GQN9 CRISPR-associated exonuclease Cas4; EC 3.1.12.1 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see paper)
HVO_RS02780 CRISPR-associated protein Cas4 from Haloferax volcanii DS2
Aligns to 26:183 / 183 (86.3%), covers 100.0% of PF01930, 153.8 bits

SSO1392 Hypothetical protein from Sulfolobus solfataricus P2
Aligns to 20:191 / 201 (85.6%), covers 98.8% of PF01930, 110.5 bits

COI_0270 CRISPR-associated protein Cas4 from Mannheimia haemolytica serotype A2 str. OVINE
Aligns to 26:204 / 221 (81.0%), covers 98.1% of PF01930, 106.5 bits

Q72TS4 CRISPR-associated exonuclease Cas4 from Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)
Aligns to 8:188 / 209 (86.6%), covers 98.1% of PF01930, 104.5 bits

HMPREF0389_01167 CRISPR-associated protein Cas4 from Filifactor alocis ATCC 35896
Aligns to 9:199 / 217 (88.0%), covers 98.1% of PF01930, 102.2 bits

MHA_0346 CRISPR-associated protein Cas4 from Mannheimia haemolytica PHL213
Aligns to 26:204 / 224 (79.9%), covers 98.1% of PF01930, 101.7 bits

COK_0801 CRISPR-associated protein Cas4 from Mannheimia haemolytica serotype A2 str. BOVINE
Aligns to 26:204 / 221 (81.0%), covers 98.1% of PF01930, 100.3 bits

XALc_2890 probable crispr-associated protein cas4 from Xanthomonas albilineans
Aligns to 8:189 / 210 (86.7%), covers 98.1% of PF01930, 96.1 bits

8d3lI / A0A4Y7WTW2 Type i-c cas4-cas1-cas2 complex bound to a pam/pam prespacer (see paper)
Aligns to 10:200 / 218 (87.6%), covers 98.1% of PF01930, 92.4 bits

AL347_11870 CRISPR-associated protein Cas4 from Pseudomonas aeruginosa
Aligns to 8:188 / 210 (86.2%), covers 96.3% of PF01930, 85.2 bits

TT_P0197 No description from Thermus thermophilus HB27
Aligns to 11:183 / 194 (89.2%), covers 98.1% of PF01930, 83.6 bits

Q6ZEI3 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming) (EC 3.1.12.1) from Synechocystis sp. PCC 6803 (see paper)
slr7015 hypothetical protein from Synechocystis sp. PCC 6803
Aligns to 7:182 / 190 (92.6%), covers 96.9% of PF01930, 76.0 bits

8d3qJ / A0A4Y7WTW2 Type i-c cas4-cas1-cas2 complex bound to a pam/nopam prespacer (see paper)
Aligns to 9:172 / 190 (86.3%), covers 98.1% of PF01930, 73.1 bits

PFREUD_03690 CRISPR-associated endonuclease Cas4/Cas1 from Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
Aligns to 8:184 / 533 (33.2%), covers 98.1% of PF01930, 72.2 bits

GKIL_1964 CRISPR-associated protein Cas4 from Gloeobacter kilaueensis JS1
Aligns to 9:185 / 198 (89.4%), covers 96.9% of PF01930, 69.6 bits

GSU0057 CRISPR-associated protein Cas1/Cas4 from Geobacter sulfurreducens PCA
Aligns to 12:198 / 559 (33.5%), covers 97.5% of PF01930, 67.3 bits

7mi4A / Q74H36 Symmetrical pam-pam prespacer bound cas4/cas1/cas2 complex (see paper)
Aligns to 8:194 / 554 (33.8%), covers 97.5% of PF01930, 67.3 bits

Pisl_1722 CRISPR-associated protein Cas4 from Pyrobaculum islandicum DSM 4184
Aligns to 54:213 / 218 (73.4%), covers 96.9% of PF01930, 65.2 bits

Q9KFY0 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming) (EC 3.1.12.1) from Alkalihalobacillus halodurans (see 2 papers)
Aligns to 6:156 / 174 (86.8%), covers 57.1% of PF01930, 64.8 bits

NGO1001 hypothetical protein, putative phage associated protein from Neisseria gonorrhoeae FA 1090
Aligns to 19:159 / 161 (87.6%), covers 72.7% of PF01930, 64.3 bits

TTX_1548 CRISPR-associated protein Cas4 from Thermoproteus tenax Kra 1
Aligns to 52:213 / 215 (75.3%), covers 98.1% of PF01930, 63.3 bits

Tneu_0576 CRISPR-associated protein Cas4 from Pyrobaculum neutrophilum V24Sta
Tneu_0576 CRISPR-associated Cas4 family protein from Thermoproteus neutrophilus V24Sta
Aligns to 11:174 / 180 (91.1%), covers 95.7% of PF01930, 62.0 bits

Pars_0755 CRISPR-associated protein Cas4 from Pyrobaculum arsenaticum DSM 13514
Aligns to 19:177 / 178 (89.3%), covers 96.9% of PF01930, 61.4 bits

CS4F1_MYXXD / Q1CW50 CRISPR-associated exonuclease Cas4/endonuclease Cas1 fusion; EC 3.1.-.-; EC 3.1.12.1 from Myxococcus xanthus (strain DK1622) (see paper)
Aligns to 33:209 / 568 (31.2%), covers 96.9% of PF01930, 57.9 bits

Francci3_3345 CRISPR-associated protein Cas4 from Frankia sp. CcI3
Aligns to 18:198 / 221 (81.9%), covers 98.1% of PF01930, 57.0 bits

PAE0079 conserved hypothetical protein from Pyrobaculum aerophilum str. IM2
Aligns to 7:170 / 171 (95.9%), covers 96.3% of PF01930, 56.7 bits

SSO1449 Hypothetical protein from Sulfolobus solfataricus P2
Aligns to 3:171 / 175 (96.6%), covers 98.1% of PF01930, 54.9 bits

PAE1763 conserved hypothetical protein from Pyrobaculum aerophilum str. IM2
Aligns to 54:212 / 214 (74.3%), covers 96.9% of PF01930, 54.9 bits

SiRe_0763 CRISPR-associated protein Cas4 from Sulfolobus islandicus REY15A
F0NH45 CRISPR-associated exonuclease Cas4 from Sulfolobus islandicus (strain REY15A)
Aligns to 3:171 / 175 (96.6%), covers 95.7% of PF01930, 54.6 bits

CAS4_FRATN / A0Q5Y6 CRISPR-associated exonuclease Cas4; EC 3.1.12.1 from Francisella tularensis subsp. novicida (strain U112) (see paper)
FTN_0760 hypothetical protein from Francisella tularensis subsp. novicida U112
Aligns to 13:195 / 196 (93.4%), covers 96.9% of PF01930, 54.0 bits

CAS4_PYRCJ / A3MTK6 CRISPR-associated exonuclease Cas4; EC 3.1.12.1 from Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1) (see 2 papers)
A3MTK6 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming) (EC 3.1.12.1) from Pyrobaculum calidifontis (see paper)
Pcal_0546 CRISPR-associated protein Cas4 from Pyrobaculum calidifontis JCM 11548
Aligns to 54:211 / 213 (74.2%), covers 97.5% of PF01930, 53.4 bits

4r5qA / A3MTK6 Crystal structure and nuclease activity of the crispr-associated cas4 protein pcal_0546 from pyrobaculum calidifontis containing a [2fe-2s] cluster
Aligns to 57:214 / 215 (73.5%), covers 97.5% of PF01930, 53.3 bits

PAE0198 conserved hypothetical protein from Pyrobaculum aerophilum str. IM2
Aligns to 6:182 / 190 (93.2%), covers 97.5% of PF01930, 53.3 bits

Pcal_1277 CRISPR-associated protein Cas4 from Pyrobaculum calidifontis JCM 11548
Aligns to 6:181 / 189 (93.1%), covers 97.5% of PF01930, 52.8 bits

CAS4_THETK / G4RJY5 CRISPR-associated exonuclease Cas4; EC 3.1.12.1 from Thermoproteus tenax (strain ATCC 35583 / DSM 2078 / JCM 9277 / NBRC 100435 / Kra 1) (see paper)
Aligns to 6:182 / 190 (93.2%), covers 97.5% of PF01930, 51.7 bits

MM_0557 hypothetical protein from Methanosarcina mazei Goe1
Aligns to 12:199 / 199 (94.5%), covers 98.8% of PF01930, 50.9 bits

MM_RS02925 CRISPR-associated protein Cas4 from Methanosarcina mazei Go1
Aligns to 37:224 / 224 (83.9%), covers 98.8% of PF01930, 50.3 bits

Tneu_1142 CRISPR-associated Cas4 family protein from Thermoproteus neutrophilus V24Sta
Tneu_1142 CRISPR-associated protein Cas4 from Pyrobaculum neutrophilum V24Sta
Aligns to 6:182 / 190 (93.2%), covers 97.5% of PF01930, 49.1 bits

FTL_1320 hypothetical protein from Francisella tularensis subsp. holarctica
Aligns to 11:189 / 190 (94.2%), covers 96.9% of PF01930, 44.9 bits

Pars_1121 CRISPR-associated protein Cas4 from Pyrobaculum arsenaticum DSM 13514
Aligns to 7:182 / 190 (92.6%), covers 96.9% of PF01930, 44.3 bits

FN0524 DNA helicase II from Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Aligns to 758:917 / 919 (17.4%), covers 70.8% of PF01930, 41.8 bits

CIMG_13558 DNA replication helicase Dna2 from Coccidioides immitis RS
Aligns to 760:880 / 1659 (7.3%), covers 62.7% of PF01930, 35.4 bits

lpp0163 hypothetical protein from Legionella pneumophila str. Paris
Aligns to 9:195 / 197 (94.9%), covers 97.5% of PF01930, 34.0 bits

FACI_IFERC00001G0010 ATP-dependent DNA helicase from Ferroplasma acidarmanus Fer1
Aligns to 735:886 / 889 (17.1%), covers 67.1% of PF01930, 32.2 bits

NP_666553 hypothetical protein from Sulfolobus islandicus rod-shaped virus 2
Aligns to 26:204 / 207 (86.5%), covers 94.4% of PF01930, 31.5 bits

SiRe_1994 CRISPR-associated protein Cas4 from Sulfolobus islandicus REY15A
Aligns to 22:199 / 202 (88.1%), covers 96.9% of PF01930, 31.4 bits

CAS4_SACS2 / Q97TX9 CRISPR-associated exonuclease Cas4; EC 3.1.12.1 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see 2 papers)
Q97TX9 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming) (EC 3.1.12.1) from Saccharolobus solfataricus (see 3 papers)
SSO0001 Hypothetical protein from Sulfolobus solfataricus P2
Aligns to 22:199 / 202 (88.1%), covers 96.3% of PF01930, 30.6 bits

4ic1D / Q97TX9 Crystal structure of sso0001 (see paper)
Aligns to 26:203 / 206 (86.4%), covers 96.3% of PF01930, 30.5 bits

BTH_I1443 Superfamily I DNA and RNA helicases from Burkholderia thailandensis E264
Aligns to 773:915 / 920 (15.5%), covers 70.8% of PF01930, 29.1 bits

JHS1_ARATH / A0A1P8ASY1 DNA replication ATP-dependent helicase/nuclease JHS1; Protein EMBRYO DEFECTIVE 2411; Protein JING HE SHENG 1; EC 3.1.-.-; EC 3.6.4.12 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 498:677 / 1331 (13.5%), covers 90.1% of PF01930, 28.6 bits

NP_001184943 DNA replication helicase from Arabidopsis thaliana
Aligns to 482:661 / 1315 (13.7%), covers 90.1% of PF01930, 28.6 bits

SJAG_04183 DNA replication endonuclease-helicase Dna2 from Schizosaccharomyces japonicus yFS275
Aligns to 317:442 / 1133 (11.1%), covers 59.0% of PF01930, 28.2 bits

NGO1000 hypothetical protein, putative phage associated protein from Neisseria gonorrhoeae FA 1090
Aligns to 14:56 / 75 (57.3%), covers 24.2% of PF01930, 25.1 bits

TT_P0136 No description from Thermus thermophilus HB27
Aligns to 7:108 / 116 (87.9%), covers 47.8% of PF01930, 23.7 bits

Or search for genetic data about PF01930 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory