PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF01947 (DUF98)

PF01947.16 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

P73322 chorismate lyase (EC 4.1.3.40) from Synechocystis sp. (see paper)
sll1797 / P73322 chorismate lyase (EC 4.1.3.40) from Synechocystis sp. (strain PCC 6803 / Kazusa) (see paper)
sll1797 ycf21 gene product (NCBI ptt file) from Synechocystis sp. PCC 6803
Aligns to 1:130 / 139 (93.5%), covers 85.9% of PF01947, 167.1 bits

AF1396 conserved hypothetical protein (NCBI ptt file) from Archaeoglobus fulgidus DSM 4304
Aligns to 9:161 / 162 (94.4%), covers 99.3% of PF01947, 143.5 bits

MJ0807 / Q58217 chorismate lyase (EC 4.1.3.40) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (see paper)
Aligns to 59:178 / 184 (65.2%), covers 67.8% of PF01947, 75.1 bits

bmp6 / A0A1S6M1P0 chorismate lyase (EC 4.1.3.40) from Hormoscilla spongeliae SP12 (see 2 papers)
Aligns to 27:182 / 192 (81.2%), covers 96.0% of PF01947, 60.8 bits

MUL_2003 chorismate pyruvate-lyase (NCBI) from Mycobacterium ulcerans Agy99
Aligns to 32:186 / 212 (73.1%), covers 94.0% of PF01947, 59.8 bits

MMAR_0100 4-hydroxybenzoate synthetase (chorismate lyase) (RefSeq) from Mycobacterium marinum M
Aligns to 22:176 / 199 (77.9%), covers 96.0% of PF01947, 54.4 bits

ML0133 conserved hypothetical protein (NCBI ptt file) from Mycobacterium leprae TN
Aligns to 22:176 / 210 (73.8%), covers 93.3% of PF01947, 48.1 bits

PHBS_MYCTU / P9WIC5 Chorismate pyruvate-lyase; 4-HB synthase; p-hydroxybenzoic acid synthase; EC 4.1.3.40 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
Mb2973c / Q7TXK6 chorismate lyase (EC 4.1.3.40) from Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) (see paper)
Mb2973c CONSERVED HYPOTHETICAL PROTEIN (NCBI) from Mycobacterium bovis AF2122/97
Rv2949c hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
Aligns to 22:179 / 199 (79.4%), covers 93.3% of PF01947, 48.0 bits

bmp6 / V4HSG8 chorismate lyase (EC 4.1.3.40) from Pseudoalteromonas luteoviolacea 2ta16 (see paper)
Aligns to 34:182 / 202 (73.8%), covers 96.0% of PF01947, 41.2 bits

PP5317 chorismate-pyruvate lyase, putative (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 31:180 / 185 (81.1%), covers 96.6% of PF01947, 27.3 bits

PputUW4_05351 chorismate lyase from Pseudomonas sp. UW4
Aligns to 31:180 / 187 (80.2%), covers 96.0% of PF01947, 22.1 bits

Or search for genetic data about PF01947 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory