PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF02594 (DUF167)

PF02594.16 hits 20 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Bd0463 hypothetical protein (NCBI) from Bdellovibrio bacteriovorus HD100
Aligns to 8:80 / 94 (77.7%), covers 98.7% of PF02594, 90.1 bits

B598_0277 DUF167 domain-containing protein from Chlamydia psittaci GR9
Aligns to 5:77 / 92 (79.3%), covers 96.1% of PF02594, 88.7 bits

FI836_03990 DUF167 domain-containing protein from Chlamydia psittaci
Aligns to 5:77 / 96 (76.0%), covers 96.1% of PF02594, 88.5 bits

VP2619 conserved hypothetical protein (NCBI ptt file) from Vibrio parahaemolyticus RIMD 2210633
Aligns to 11:83 / 96 (76.0%), covers 98.7% of PF02594, 88.5 bits

CG14966 uncharacterized protein from Drosophila melanogaster
Aligns to 49:121 / 140 (52.1%), covers 97.4% of PF02594, 88.1 bits

YggU / b2953 DUF167 domain-containing protein YggU from Escherichia coli K-12 substr. MG1655 (see 2 papers)
Aligns to 10:82 / 96 (76.0%), covers 98.7% of PF02594, 87.5 bits

APL_1380 hypothetical protein (NCBI) from Actinobacillus pleuropneumoniae L20
Aligns to 12:84 / 97 (75.3%), covers 98.7% of PF02594, 85.5 bits

CEF07_01320, CHAB577_0262 DUF167 domain-containing protein from Chlamydia abortus
Aligns to 5:77 / 96 (76.0%), covers 96.1% of PF02594, 85.4 bits

RL4503 hypothetical protein (NCBI) from Rhizobium leguminosarum bv. viciae 3841
Aligns to 11:88 / 103 (75.7%), covers 97.4% of PF02594, 84.2 bits

APJL_1398 hypothetical protein (RefSeq) from Actinobacillus pleuropneumoniae serovar 3 str. JL03
Aligns to 12:84 / 98 (74.5%), covers 92.2% of PF02594, 82.1 bits

lpg2716 Hypothetical protein (NCBI) from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Aligns to 9:81 / 95 (76.8%), covers 97.4% of PF02594, 79.4 bits

CT388 hypothetical protein (RefSeq) from Chlamydia trachomatis D/UW-3/CX
Aligns to 5:77 / 100 (73.0%), covers 96.1% of PF02594, 78.2 bits

CT_388 hypothetical protein from Chlamydia trachomatis D/UW-3/CX
Aligns to 20:92 / 115 (63.5%), covers 96.1% of PF02594, 77.4 bits

O26734 UPF0235 protein MTH_637 from Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Aligns to 13:84 / 104 (69.2%), covers 98.7% of PF02594, 76.2 bits

SPO0937 hypothetical protein (NCBI) from Silicibacter pomeroyi DSS-3
SPO0937 DUF167 domain-containing protein from Ruegeria pomeroyi DSS-3
Aligns to 19:89 / 92 (77.2%), covers 93.5% of PF02594, 75.5 bits

A1G_07140 hypothetical protein (RefSeq) from Rickettsia rickettsii str. 'Sheila Smith'
Aligns to 13:89 / 105 (73.3%), covers 98.7% of PF02594, 73.3 bits

MT2038 hypothetical protein (NCBI) from Mycobacterium tuberculosis CDC1551
Aligns to 4:75 / 76 (94.7%), covers 93.5% of PF02594, 69.5 bits

Y6344_ARATH / Q8GWQ6 UPF0235 protein At5g63440 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G63440 hypothetical protein (RefSeq) from Arabidopsis thaliana
NP_568972 hypothetical protein (DUF167) from Arabidopsis thaliana
Aligns to 143:215 / 232 (31.5%), covers 97.4% of PF02594, 64.7 bits

Mmah_0207 protein of unknown function DUF167 (RefSeq) from Methanohalophilus mahii DSM 5219
D5E990 UPF0235 protein Mmah_0207 from Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP)
Aligns to 13:88 / 103 (73.8%), covers 97.4% of PF02594, 61.3 bits

LBF_5037 hypothetical protein (RefSeq) from Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'
Aligns to 1:72 / 75 (96.0%), covers 96.1% of PF02594, 58.0 bits

Or search for genetic data about PF02594 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory