Family Search for PF02594 (DUF167)
PF02594 hits 25 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
Bd0463 hypothetical protein from Bdellovibrio bacteriovorus HD100
Aligns to 8:80 / 94 (77.7%), covers 98.7% of PF02594, 91.3 bits
- DivIVA Controls Progeny Morphology and Diverse ParA Proteins Regulate Cell Division or Gliding Motility in Bdellovibrio bacteriovorus
Milner, Frontiers in microbiology 2020 - “...pyrroline-5-carboxylate reductase (Bd0465 accession: NP_967453.1 ) and upstream of a gene encoding an YggU homolog (Bd0463 accession: NP_967451.1 ). (B) Alignment of DivIVA Bb with DivIVA homologs in Streptococcus pneumoniae (DivIVA Spn ; accession: AAC95445.1 ) and Bacillus subtilis (DivIVA Bsub ; accession: P71021.1 ). Sequences...”
- “...( Figure 6 and Supplementary Figure S5 ). No interaction was detected between DivIVA Bd -Bd0463, and for DivIVA Bd with ParA1, ParA2 or ParA3. We later turned to analyze Par protein function (see below) as there is a potential three-way interaction between Bd0465-DivIVA Bd ,...”
VP2619 conserved hypothetical protein from Vibrio parahaemolyticus RIMD 2210633
Aligns to 11:83 / 96 (76.0%), covers 98.7% of PF02594, 89.9 bits
B598_0277 DUF167 family protein from Chlamydia psittaci GR9
Aligns to 5:77 / 92 (79.3%), covers 96.1% of PF02594, 89.1 bits
- Data of de novo genome assembly of the Chlamydia psittaci strain isolated from the livestock in Volga Region, Russian Federation
Feodorova, Data in brief 2020 - “...261,710..262,906 B598_0275 FI836_03980 86.80 8 putative lipoprotein 263,013..263,957 B598_0276 FI836_03985 92.28 9 hypothetical protein 263,962..264,240 B598_0277 FI836_03990 92.45 10 ABC transporter substrate binding family protein 263,962..264,240 B598_0278 FI836_03995 93.77 11 ll -diaminopimelate aminotransferase 265,277..266,473 B598_0279 FI836_04000 91.31 12 hypothetical protein 266,738..267,508 B598_0280 FI836_04005 84.77 13 hypothetical...”
YggU / b2953 DUF167 domain-containing protein YggU from Escherichia coli K-12 substr. MG1655 (see 2 papers)
P52060 UPF0235 protein YggU from Escherichia coli (strain K12)
Aligns to 10:82 / 96 (76.0%), covers 98.7% of PF02594, 88.4 bits
asl3196 hypothetical protein from Nostoc sp. PCC 7120
Aligns to 2:72 / 75 (94.7%), covers 94.7% of PF02594, 88.2 bits
APL_1380 hypothetical protein from Actinobacillus pleuropneumoniae L20
Aligns to 12:84 / 97 (75.3%), covers 98.7% of PF02594, 86.0 bits
CEF07_01320, CHAB577_0262 DUF167 domain-containing protein from Chlamydia abortus
Aligns to 5:77 / 96 (76.0%), covers 96.1% of PF02594, 85.7 bits
- Data of de novo genome assembly of the Chlamydia psittaci strain isolated from the livestock in Volga Region, Russian Federation
Feodorova, Data in brief 2020 - “...48 C. abortus GN6 CP021996.1 hypothetical protein 262,872..263,816 CEF07_01315 FI836_03985 99.68 49 hypothetical protein 263,821..264,111 CEF07_01320 FI836_03990 98.92 50 ABC transporter substrate-binding protein 264,096..265,139 CEF07_01325 FI836_03995 2 Experimental design, materials, and methods 2.1 DNA extraction, Illumina and nanopore sequencing, and assembly Total DNA was extracted from...”
- “...HrcA 258,322..259,482 CHAB577_0258 FI836_03970 36 uncharacterized protein 261,590..262,786 CHAB577_0260 FI836_03980 97.16 37 uncharacterized protein 263,842..264,132 CHAB577_0262 FI836_03990 99.43 38 putative ABC transporter substrate-binding protein 264,117..265,160 CHAB577_0263 FI836_03995 39 l , l -diaminopimelate aminotransferase 265,157..266,353 CHAB577_0264 FI836_04000 40 putative ABC transporter substrate-binding protein 264,117..265,160 CHAB577_0263 FI836_03995 99.33...”
CG14966 uncharacterized protein from Drosophila melanogaster
Aligns to 49:121 / 140 (52.1%), covers 97.4% of PF02594, 85.1 bits
- New levels of transcriptome complexity at upper thermal limits in wild Drosophila revealed by exon expression analysis
Telonis-Scott, Genetics 2013 - “...exon analysis Genea Intron/s (bp) Acp54A1 CG32198 CG15357 CG14966 Robl37BC obst-I CG30487 CG18125 CG6974 Acp29AB GstE7 GstE1 CG4461b Hsp23b fan CG32271 Hsp26b...”
- “...or regulated by HSF including CG18125, GstE7, GstE1, and CG14966, with the latter being adjacent to Hsp83 (Birch-Machin et al. 2005; Jensen et al. 2008;...”
- The molecular chaperone Hsp90 is required for cell cycle exit in Drosophila melanogaster
Bandura, PLoS genetics 2013 - “...the Hsp83 genomic rescue construct also contains the entire coding sequence for the neighboring genes CG14966 and CG32276 [44] . Although we have not sequenced these genes in the mutant strain to confirm that they are unaltered, both reside in a region that remains intact in...”
- Hsp90 is important for fecundity, longevity, and buffering of cryptic deleterious variation in wild fly populations
Chen, BMC evolutionary biology 2012 - “...of the gene CG14965 immediately upstream of Hsp83 , as well as the entire gene CG14966 immediately downstream of Hsp83 (see additional file 8 and sequences in additional file 9 of the 3 primer pairs (i) CG14965-S1F and S1R, (ii) S2F and S2R, (iii) S3F and...”
- “...). This region covers the whole Hsp83 coding region and most of the downstream gene CG14966 . This analysis found no polymorphisms. To determine if the Hsp83 mutation was in linkage disequilibrium with the inversion Inv(3L)P , we genotyped the Hsp83 mutant and wild-type lines for...”
- Genomic analysis of heat-shock factor targets in Drosophila
Birch-Machin, Genome biology 2005 - “...the ChIP also reveals a second peak at the 3' of Hsp83 extending to cover CG14966 (a gene of unknown function) and 3' to CG32276 , a predicted chaperone. This additional signal contains matches with an Hsf consensus binding sequence, suggesting that it represents a bona...”
Atu2660 hypothetical protein from Agrobacterium tumefaciens str. C58 (Cereon)
Aligns to 91:168 / 183 (42.6%), covers 98.7% of PF02594, 82.4 bits
APJL_1398 hypothetical protein from Actinobacillus pleuropneumoniae serovar 3 str. JL03
Aligns to 12:85 / 98 (75.5%), covers 92.1% of PF02594, 82.3 bits
- Global effects of catecholamines on Actinobacillus pleuropneumoniae gene expression
Li, PloS one 2012 - “...protein 2.28 2.07 APJL_1024 - inner membrane protein 2.54 1.86 APJL_1143 pfkA phosphofructokinase 2.84 2.62 APJL_1398 - hypothetical protein 1.75 1.60 APJL_1942 - Zn-dependent protease with chaperone function 1.58 1.56 APJL_1992 - integral membrane protein 2.12 1.54 APL_0443 - autotransporter adhesin 1.54 1.61 APL_0540 - thiamine...”
RL4503 hypothetical protein from Rhizobium leguminosarum bv. viciae 3841
Aligns to 11:88 / 103 (75.7%), covers 98.7% of PF02594, 81.7 bits
LOC8055455 UPF0235 protein C15orf40 homolog from Sorghum bicolor
Aligns to 41:113 / 131 (55.7%), covers 98.7% of PF02594, 81.2 bits
AT1G49170 hypothetical protein from Arabidopsis thaliana
Aligns to 36:108 / 126 (57.9%), covers 98.7% of PF02594, 80.8 bits
- Natural variation identifies new effectors of water-use efficiency in Arabidopsis
Bhaskara, Proceedings of the National Academy of Sciences of the United States of America 2022 - “...general control nonrepressible 20 ( gcn20-2 ), and a hypothetical protein with unknown function ( at1g49170 ) had a strong decrease in biomass as well as strongly reduced water consumption ( Fig. 4 ). However, biomass was more strongly reduced, leading to a substantial decrease in...”
- “...temperatures and no change in SD, consistent with a previous report ( 37 ). The AT1G49170 mutant also had decreased leaf temperature ( Fig. 4 and SI Appendix , Fig. S8 ). Fig. 4. Mutants of 13 genes had reduced biomass and reduced water consumption as...”
CT388 hypothetical protein from Chlamydia trachomatis D/UW-3/CX
Aligns to 5:77 / 100 (73.0%), covers 96.1% of PF02594, 80.0 bits
CT_388 hypothetical protein from Chlamydia trachomatis D/UW-3/CX
Aligns to 20:92 / 115 (63.5%), covers 96.1% of PF02594, 79.1 bits
lpg2716 Hypothetical protein from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Aligns to 9:81 / 95 (76.8%), covers 97.4% of PF02594, 79.1 bits
- Induction of caspase 3 activation by multiple Legionella pneumophila Dot/Icm substrates
Zhu, Cellular microbiology 2013 - “...replication. Deletion of single caspase-3 activator or all five of these genes (Lpg0898, Lpg1625, Lpg0716, Lpg2716, and Lpg2831) did not cause detectable defect in caspase-3 activation ( Fig. S6 ). Consistent with this observation, the 5 mutant did not display any defect in intracellular bacterial growth...”
- “...al. , 2003 ). Non-polar deletions of each or the combination of lpg0716, lpg0898, lpg1625, lpg2716 , and lpg2831 were constructed as described elsewhere ( Luo et al. , 2004 ). In each case, primers were designed such that the open reading frame was replaced by...”
Dde_2170 Uncharacterized conserved protein from Desulfovibrio desulfuricans G20
Aligns to 14:86 / 118 (61.9%), covers 98.7% of PF02594, 78.2 bits
- Transcriptomics and Functional Analysis of Copper Stress Response in the Sulfate-Reducing Bacterium Desulfovibrio alaskensis G20
Tripathi, International journal of molecular sciences 2022 - “...2.77 0.54 Dde_0111 # Zinc resistance-associated protein 8.56 0.30 Dde_4025 # Uncharacterized protein 7.07 0.64 Dde_2170 # UPF0235 protein Dde_2170 6.48 0.39 Dde_2819 # Uncharacterized protein 6.11 0.27 Dde_3737 # Putative GAF sensor protein 5.98 0.77 Dde_2991 # Transcription termination/antitermination protein, NusG 5.97 0.36 Dde_3226 #...”
- “...aminopeptidase 1.68 0.69 Dde_0925 ** Uncharacterized protein 1.67 0.62 Dde_0715 ## Uncharacterized protein 5.93 0.32 Dde_2170 ## UPF0235 protein Dde_2170 5.72 0.37 Dde_4025 ## Uncharacterized protein 5.58 0.63 Dde_0356 ## Flagellar basal body rod protein FlgB 5.34 0.35 Dde_0221 ## Response regulator receiver protein 5.17 0.42...”
O26734 UPF0235 protein MTH_637 from Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Aligns to 13:84 / 104 (69.2%), covers 98.7% of PF02594, 77.4 bits
- Insight into the protein solubility driving forces with neural attention.
Raimondi, PLoS computational biology 2020 - “...mutational screening of proteins, as shown in Fig 3 for UPF0235 protein MTH_637 (Uniprot ID: O26734), which is present in the test dataset [ 22 ]. The protein is annotated as soluble in the dataset, and SKADE predicts it correctly (score of 0.733). We implemented each...”
- “...S values (in blue) decrease it. Fig 3 shows that, since the predicted solubility of O26734 is already very high, most of the mutations have the effect of decreasing the predicted solubility. In particular, there are few regions with very high effect, such as the residues...”
SPO0937 DUF167 domain-containing protein from Ruegeria pomeroyi DSS-3
Aligns to 19:89 / 92 (77.2%), covers 93.4% of PF02594, 77.2 bits
A1G_07140 hypothetical protein from Rickettsia rickettsii str. 'Sheila Smith'
Aligns to 13:89 / 105 (73.3%), covers 97.4% of PF02594, 71.7 bits
- Limited transcriptional responses of Rickettsia rickettsii exposed to environmental stimuli
Ellison, PloS one 2009 - “...A1G_07355 (RrIowa1570) 4.26 A1G_06080 (RrIowa1305) 4.02 RrIowa0127 c 3.86 A1G_06415 (RrIowa1374) 3.80 A1G_02825 (RrIowa0593) 3.76 A1G_07140 (RrIowa1526) 3.76 A1G_02575 (RrIowa0544) 3.75 A1G_01810 (RrIowa0384) 3.71 A1G_07135 (RrIowa1524) 3.69 A1G_06075 (RrIowa1304) 3.67 A1G_06375 (RrIowa1366) 3.61 A1G_00925 (RrIowa0201) 3.59 A1G_00120 (RrIowa0027) 3.52 A1G_03785 (RrIowa0796) 3.51 RrIowa1046 c 3.49 A1G_07280...”
- “...1.85 Hypothetical d RrIowa0127 e 1.95 3.86 Hypothetical d A1G_04310 (RrIowa0905) 1.91 11.73 Hypothetical d A1G_07140 (RrIowa1526) 1.85 3.76 Hypothetical A1G_06375 (RrIowa1366) 1.79 3.61 1.40.1 3.50.3 Hypothetical A1G_00070 (RrIowa0016) 1.68 3.25 Hypothetical d A1G_07280 (RrIowa1556) 1.66 3.36 cytidylyltransferase A1G_04305 (RrIowa0904) 1.58 18.55 1.70.4 14.32.6 Hypothetical d...”
MT2038 hypothetical protein from Mycobacterium tuberculosis CDC1551
Aligns to 3:75 / 76 (96.1%), covers 94.7% of PF02594, 70.9 bits
Y6344_ARATH / Q8GWQ6 UPF0235 protein At5g63440 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_568972 hypothetical protein (DUF167) from Arabidopsis thaliana
AT5G63440 hypothetical protein from Arabidopsis thaliana
Aligns to 143:215 / 232 (31.5%), covers 98.7% of PF02594, 65.0 bits
Mmah_0207 protein of unknown function DUF167 from Methanohalophilus mahii DSM 5219
D5E990 UPF0235 protein Mmah_0207 from Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP)
Aligns to 13:88 / 103 (73.8%), covers 98.7% of PF02594, 63.1 bits
LBF_5037 hypothetical protein from Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'
Aligns to 1:72 / 75 (96.0%), covers 96.1% of PF02594, 57.7 bits
CLIBASIA_00580 hypothetical protein from Candidatus Liberibacter asiaticus str. psy62
Aligns to 1:80 / 98 (81.6%), covers 94.7% of PF02594, 55.7 bits
Or search for genetic data about PF02594 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory