Family Search for PF02694 (UPF0060)
Running HMMer for PF02694
PF02694 hits 14 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
sll0793 hypothetical protein from Synechocystis sp. PCC 6803
Aligns to 2:108 / 108 (99.1%), covers 100.0% of PF02694, 176.3 bits
- Evaluation of promoters and ribosome binding sites for biotechnological applications in the unicellular cyanobacterium Synechocystis sp. PCC 6803
Englund, Scientific reports 2016 - “...in the absence of Zn 2+ . ziaR is transcribed upstream of ziaA together with sll0793 , which codes for a membrane bound protein likely affiliated with Zn 2+ transport 18 . A frequent biotechnological application for cyanobacteria is metabolic engineering for production of a desired...”
- A gene cluster involved in metal homeostasis in the cyanobacterium Synechocystis sp. strain PCC 6803
García-Domínguez, Journal of bacteriology 2000 - “...dependent (51). A putative operon composed of two ORFs, sll0793 and sll0792, separated by 11 bp appears upstream from the ziaA gene and in the opposite...”
- “...sll0792 encodes ZiaR, the transcriptional repressor of ziaA. sll0793 is a putative membrane protein that does not share significant homology with any other...”
- An SmtB-like repressor from Synechocystis PCC 6803 regulates a zinc exporter
Thelwell, Proceedings of the National Academy of Sciences of the United States of America 1998 - “...sequenced genome, are shown with an adjacent ORF sll0793, and shaded rectangles coincide with ORFs. ORFs slr0798 and sll0792 have previously been referred to...”
- “...probe (FP) are indicated. To examine whether ORF sll0793 influences transcription from the ziaA operator-promoter, 886 bp of sequence from upstream of ziaA,...”
BSU08120 hypothetical protein from Bacillus subtilis subsp. subtilis str. 168
Aligns to 2:109 / 109 (99.1%), covers 100.0% of PF02694, 170.9 bits
YnfA / b1582 putative transporter YnfA from Escherichia coli K-12 substr. MG1655 (see 6 papers)
YNFA_ECOLI / P76169 UPF0060 membrane protein YnfA from Escherichia coli (strain K12) (see 2 papers)
ynfA / RF|NP_416099 UPF0060 membrane protein ynfA from Escherichia coli K12 (see paper)
b1582 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:108 / 108 (100.0%), covers 99.1% of PF02694, 164.3 bits
- Decoding HMMs using the k best paths: algorithms and applications.
Brown, BMC bioinformatics 2010 - “...SugE [Swiss-Prot: P69937 ], CrcB [Swiss-Prot: P37002 ], YdgC [Swiss-Prot: P0ACX0 ], and YnfA [Swiss-Prot: P76169 ]. For all of these proteins, the two topologies differ only in their sidedness : they all are short proteins with four transmembrane helices, and have very little information in...”
- 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
, Haematologica 2013 - SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences
Lacour, Journal of bacteriology 2004 - “...Hypothetical protein (b4045) Hypothetical (membrane) protein (b1582) Hypothetical (periplasmic) protein (b3097) Hypothetical protein (b4217) CHM CHM CHM CHM...”
- DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli
DeLisa, Journal of bacteriology 2001 - “...3.1 b1582 ................................................................................... 3.0 b1445...”
Rv2639c hypothetical protein from Mycobacterium tuberculosis H37Rv
Aligns to 2:109 / 110 (98.2%), covers 100.0% of PF02694, 164.1 bits
BHW77_15920 YnfA family protein from Escherichia coli
Aligns to 1:108 / 108 (100.0%), covers 99.1% of PF02694, 161.6 bits
- Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7
Sharma, BMC genomics 2019 - “...29 2,800,1432,860,221 BHW77_14595 and BHW77_14980 50.25 NC_004813 13/Enterobacteria phage BP-4795 57.4 32 2,967,2683,024,670 BHW77_15525 and BHW77_15920 50.94 NC_004813 14/Enterobacteria phage P88 24.8 18 3,361,8913,386,762 BHW77_17640 and BHW77_17830 50.31 NC_026014 15/ Escherichia virus Lambda 30.1 14 3,440,4753,470,640 BHW77_18140 and BHW77_18340 54.39 NC_001416 16/ Shigella phage POCJ13 24.1...”
SAR2425 putative membrane protein from Staphylococcus aureus subsp. aureus MRSA252
Aligns to 1:108 / 108 (100.0%), covers 99.1% of PF02694, 139.9 bits
SACOL2333 YnfA family protein from Staphylococcus aureus subsp. aureus COL
SAUSA300_2286 hypothetical protein from Staphylococcus aureus subsp. aureus USA300_FPR3757
Aligns to 1:108 / 108 (100.0%), covers 99.1% of PF02694, 138.0 bits
XOC_3249 YnfA family protein from Xanthomonas oryzae pv. oryzicola BLS256
Aligns to 5:110 / 111 (95.5%), covers 95.3% of PF02694, 136.2 bits
- Transcriptome analysis of Xanthomonas oryzae pv. oryzicola exposed to H2O2 reveals horizontal gene transfer contributes to its oxidative stress response
Fang, PloS one 2019 - “...early, middle, and late stages after exposure, respectively. Three genes ( xoc_1643 , xoc_1946 , xoc_3249 ) showing significantly different expression levels had proven relationships with oxidative stress response and pathogenesis. Moreover, a hypothetical protein (XOC_2868) showed significantly differential expression, and the xoc_2868 mutants clearly displayed...”
- “...a qRT-PCR analysis of four selected genes ( xoc_1643 , xoc_1946 , xoc_2868 , and xoc_3249 ) that showed different levels of expression at 7, 15, and 45 minutes ( S3 Table ). The mRNA abundance of these transcripts at these three time-points after the H...”
RR42_RS34240 putative efflux pump, required for thallium (I) resistance from Cupriavidus basilensis FW507-4G11
Aligns to 1:105 / 105 (100.0%), covers 97.2% of PF02694, 121.1 bits
- mutant phenotype: PFam PF02694.11 (UPF0060). conserved specific phenotype of UPF0060
LO74_RS09665 YnfA family protein from Burkholderia thailandensis E264
Aligns to 4:110 / 110 (97.3%), covers 95.3% of PF02694, 120.7 bits
- An IS-mediated, RecA-dependent, bet-hedging strategy in Burkholderia thailandensis
Lowrey, eLife 2023 - “...This study Inserted I- Sce I recognition sites between LO74_RS08325 and LO74_RS08330 and LO74_RS09660 and LO74_RS09665. Genetic reagent ( Burkholderia thailandensis ) WT with gusA insertion This study gusA inserted between LO74_RS09420 and LO74_RS31810 near junction sequence. Genetic reagent ( Burkholderia thailandensis ) recA with gusA...”
- “...Flp recombinase. Inserted I- Sce I recognition sites between LO74_RS08325 and LO74_RS08330 and LO74_RS09660 and LO74_RS09665. Genetic reagent ( Burkholderia thailandensis ) bcpAIOB with I- Sce I sites 50 kb outside duplicating region This study LO74_RS09295LO74_RS09305 ( bcpAIOB ) replaced with nptII surrounded by FRT sites....”
Ga0059261_1942 putative efflux pump, required for thallium (I) resistance from Sphingomonas koreensis DSMZ 15582
Aligns to 1:106 / 109 (97.2%), covers 97.2% of PF02694, 109.3 bits
- mutant phenotype: PFam PF02694.11 (UPF0060). conserved specific phenotype of UPF0060
IYO_RS20435 YnfA family protein from Pseudomonas syringae pv. actinidiae ICMP 18884
Aligns to 1:107 / 110 (97.3%), covers 95.3% of PF02694, 101.5 bits
AO356_03600 putative efflux pump, required for thallium (I) resistance from Pseudomonas fluorescens FW300-N2C3
Aligns to 1:107 / 110 (97.3%), covers 95.3% of PF02694, 100.6 bits
- mutant phenotype: PFam PF02694.11 (UPF0060). conserved specific phenotype of UPF0060
PA3275 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 1:107 / 109 (98.2%), covers 95.3% of PF02694, 94.4 bits
Or search for genetic data about PF02694 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory