Family Search for PF02696 (UPF0061)

PF02696.14 hits 21 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SELO_YEAST / Q08968 Protein adenylyltransferase SelO, mitochondrial; Selenoprotein O; SelO; EC 2.7.7.- from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 5 papers)
YPL222W Fmp40p (RefSeq) from Saccharomyces cerevisiae
Aligns to 48:649 / 688 (87.5%), covers 99.6% of PF02696, 561.1 bits

• function: Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Tyr residues of target mitochondrial proteins (AMPylation) (PubMed:30270044). Involved in redox homeostasis by regulating the cellular response to oxidative stress (PubMed:30270044). Regulates protein S-glutathionylation levels possibly by AMPylation of deglutathionylation enzymes such as glutaredoxins (PubMed:30270044).
  catalytic activity: ATP + L-tyrosyl-[protein] = diphosphate + O-(5'-adenylyl)-L- tyrosyl-[protein] (RHEA:54288)
  cofactor: Mg(2+)
  disruption phenotype: Reduced growth and survival in presence of oxygen reactive species.
• Assessment of inactivating stop codon mutations in forty Saccharomyces cerevisiae strains: implications for [PSI] prion- mediated phenotypes
  Fitzpatrick, PloS one 2011
  • “...K535TAA171 amino acid truncation YOR183W FYV12 Protein of unknown function 678,996 E42TAA87 amino acid truncation YPL222W b FMP40 Proposed to be involved in responding to stresses 130,893 Q245TAA443 amino acid truncation a Information obtained from Saccharomyces Genome Database. b ISCM unique to 74-D694. 10.1371/journal.pone.0028684.t003 Table 3...”
• From complete genome sequence to 'complete' understanding?
  Galperin, Trends in biotechnology 2010
  • “...Alport syndrome, mental retardation, midface hypoplasia, and elliptocytosis Predicted RNA-modifying enzyme [ 80 ] ydiU YPL222w SELO PF02696 0397 n/a Selenoprotein O, in yeast localized to mitochondria; not found in archaea No news Modified from Table 3 from Ref [ 39 ] with permission from Oxford...”
• Saccharomyces cerevisiae signature genes for predicting nitrogen deficiency during alcoholic fermentation
  Mendes-Ferreira, Applied and environmental microbiology 2007
  • “...Gene name YNL270c YMR280c YGL166w YOR180c YKR076w YPL222w YDL222c YMR250w YDL223c YOR391c YLR174w YML128c YPL134c YDR313c YDL204w YIL113w YDR238c YMR175w...”
• 'Conserved hypothetical' proteins: prioritization of targets for experimental study
  Galperin, Nucleic acids research 2004
  • “...1690 01205 1739 03853 0062 02410 0799 01784 0327 01709 0217 YPL222w SELO 02696 0397 2542 3274 3326 3140 3833 3299 2585 3212 4131 2972 n/a n/a n/a n/a 1UC2 1VI7...”
• Genome-wide amplifications caused by chromosomal rearrangements play a major role in the adaptive evolution of natural yeast
  Infante, Genetics 2003 (secret)

UTI89_C1899 hypothetical protein YdiU (NCBI) from Escherichia coli UTI89
c2102 Hypothetical protein ydiU (NCBI ptt file) from Escherichia coli CFT073
Aligns to 1:451 / 478 (94.4%), covers 99.1% of PF02696, 523.7 bits

• Cathelicidin Peptides Restrict Bacterial Growth via Membrane Perturbation and Induction of Reactive Oxygen Species
  Rowe-Magnus, mBio 2019
  • “...Transcriptional regulator of multiple antibiotic resistance marR UTI89_C1604 1.28 5.63E06 Universal stress protein E uspE UTI89_C1899 1.27 5.87E07 Hypothetical protein ydiU UTI89_C0686 1.22 2.49E05 Hypothetical protein ybfN UTI89_C0505 1.20 4.83E03 Inosine kinase gsk UTI89_C4481 1.13 3.04E06 Hypothetical protein fdoG UTI89_C3236 1.12 3.41E05 Hypothetical protein ygdR UTI89_C3330...”
• The Ras signaling inhibitor LOX-PP interacts with Hsp70 and c-Raf to reduce Erk activation and transformed phenotype of breast cancer cells
  Sato, Molecular and cellular biology 2011 (secret)

YdiU / b1706 UPF0061 family protein YdiU from Escherichia coli K-12 substr. MG1655 (see 4 papers)
SELO_ECOLI / P77649 Protein adenylyltransferase SelO; Selenoprotein O homolog; SelO; EC 2.7.7.-; EC 2.7.7.n1 from Escherichia coli (strain K12) (see paper)
ydiU / RF|NP_416221 UPF0061 protein ydiU from Escherichia coli K12 (see paper)
b1706 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:451 / 478 (94.4%), covers 99.1% of PF02696, 521.6 bits

• function: Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr and Tyr residues of target proteins (AMPylation). Cannot use GTP, CTP or UTP as cosubstrate. AMPylates SucA at 'Thr-405' and GrxA on 'Tyr-13'. Regulates protein S-glutathionylation levels probably by AMPylation of deglutathionylation enzymes such as GrxA. Probably involved in redox homeostasis.
  catalytic activity: ATP + L-tyrosyl-[protein] = diphosphate + O-(5'-adenylyl)-L- tyrosyl-[protein] (RHEA:54288)
  catalytic activity: ATP + L-threonyl-[protein] = 3-O-(5'-adenylyl)-L-threonyl- [protein] + diphosphate (RHEA:54292)
  catalytic activity: ATP + L-seryl-[protein] = 3-O-(5'-adenylyl)-L-seryl-[protein] + diphosphate (RHEA:58120)
  cofactor: Mg(2+)
  disruption phenotype: Moderate decrease in global protein S- glutathionylation.
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013

SELO_PSESM / Q87VB1 Protein adenylyltransferase SelO; EC 2.7.7.-; EC 2.7.7.n1 from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) (see paper)
Aligns to 3:458 / 487 (93.6%), covers 98.9% of PF02696, 511.2 bits

• function: Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation).
  catalytic activity: ATP + L-tyrosyl-[protein] = diphosphate + O-(5'-adenylyl)-L- tyrosyl-[protein] (RHEA:54288)
  catalytic activity: ATP + L-threonyl-[protein] = 3-O-(5'-adenylyl)-L-threonyl- [protein] + diphosphate (RHEA:54292)
  catalytic activity: ATP + L-seryl-[protein] = 3-O-(5'-adenylyl)-L-seryl-[protein] + diphosphate (RHEA:58120)
  cofactor: Mg(2+)

PA5023 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 3:457 / 486 (93.6%), covers 98.9% of PF02696, 502.9 bits

• PtrB of Pseudomonas aeruginosa suppresses the type III secretion system under the stress of DNA damage
  Wu, Journal of bacteriology 2005
  • “...analysis indicated that two downstream genes, PA5022 and PA5023, are in the same operon with PA5021, where PA5022 and PA5023 encode two unknown proteins....”
• Effect of anaerobiosis and nitrate on gene expression in Pseudomonas aeruginosa
  Filiatrault, Infection and immunity 2005
  • “...PA4762 PA4853 PA4916 PA4917 PA4918 PA4919 PA4920 PA4921 PA5023 PA5048 PA5117 PA5118 PA5139 PA5167 PA5168 PA5169 PA5275 PA5296 PA5304 PA5372 PA5415 PA5436 PA5446...”

PBPRA2020 hypothetical protein (NCBI) from Photobacterium profundum SS9
Aligns to 11:493 / 522 (92.5%), covers 99.4% of PF02696, 470.7 bits

• Protein evolution in deep sea bacteria: an analysis of amino acids substitution rates
  Campanaro, BMC evolutionary biology 2008
  • “...q (%) 1 Putative Phosphate ABC Transporter, Permease Protein PBPRA1392 0581P 4.3 2 Hypothetical Protein PBPRA2020 - 4.8 3 Hypothetical Phosphoribosylaminoimidazole Carboxylase, Catalytic Subunit PBPRA3574 0041F 0.0 4 Dithiobiotin Synthetase PBPRA2326 0132H 8.3 5 Putative Xanthine/Uracil Permease PBPRA0186 2233F 8.3 6 Hypothetical TonB Protein PBPRA2103 0810M...”

Galf_2424 YdiU family protein from Gallionella capsiferriformans ES-2
Aligns to 18:486 / 518 (90.5%), covers 97.6% of PF02696, 454.4 bits

• Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics
  Emerson, Frontiers in microbiology 2013
  • “...are homologs of algJ and algF , genes involved in alginate biosynthesis. A second cluster (Galf_2424 Galf_2435) has 10 genes involved in cellulose biosynthesis; however one of these (Galf_2432), an 1179aa cellulose synthase gene is interrupted by a transposon that could disrupt the functionality of cellulose...”

NP_196807 selenoprotein O from Arabidopsis thaliana
AT5G13030 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 114:601 / 633 (77.1%), covers 96.2% of PF02696, 450.8 bits

• SELENOPROTEIN O is a chloroplast protein involved in ROS scavenging and its absence increases dehydration tolerance in Arabidopsis thaliana.
  Fichman, Plant science : an international journal of experimental plant biology 2018 (PubMed)
  • GeneRIF: The study elucidates SELO as a PSI-related component involved in regulating ROS levels and stress responses.
• Small RNA and PARE sequencing in flower bud reveal the involvement of sRNAs in endodormancy release of Japanese pear (Pyrus pyrifolia 'Kosui')
  Bai, BMC genomics 2016
  • “...miRn46 Pbr035452.1 735 3 3 0.02 AT4G05320 polyubiquitin 10 miRn54 Pbr000659.1 966 2 2.5 0.02 AT5G13030 NA miRn54 Pbr005201.1 1526 1 4 0 AT5G35690 NA miRn55 Pbr009389.1 551 1 4.5 0.04 AT3G12380 actin-related protein 5 miRn57 Pbr039571.2 962 2 2.5 0.03 AT2G34470 urease accessory protein G...”
• A genome-scale mining strategy for recovering novel rapidly-evolving nuclear single-copy genes for addressing shallow-scale phylogenetics in Hydrangea
  Granados, BMC evolutionary biology 2015
  • “...were randomly selected from the pool for primer design: AT1G10840, AT1G63900, AT2G17975, AT3G54170, AT4G35850, AT5G12040, AT5G13030, AT5G48470, AT5G57410 and AT5G64860. These genes were subsequently aligned to the A. thaliana full length genomic sequence obtained from TAIR ( http://www.arabidopsis.org/ ). Alignments were screened for regions with high...”

TTHERM_00852990 selenoprotein O from Tetrahymena thermophila SB210
Aligns to 38:602 / 634 (89.1%), covers 97.2% of PF02696, 439.3 bits

• Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
  Coyne, BMC genomics 2008
  • “...Genes Glutathione Peroxidase TTHERM_01099010 N.A. 0 Thioredoxin Reductase TTHERM_00723630 N.A. 5 STV, 2 TSA SelO TTHERM_00852990 N.A. 4 STV The first six are putative selenoproteins. EST library condition abbreviations are as in Table 1 Because of the numerous gene model updates, both manual and automated, performed...”

An07g10280 YdiU domain protein from Aspergillus niger CBS 513.88
Aligns to 68:603 / 637 (84.1%), covers 95.9% of PF02696, 433.7 bits

• The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger
  Kwon, BMC genomics 2012
  • “...An08g03960 hypothetical endoplasmic reticulum associated protein 1.55 7.36E-06 1.47E-04 An08g03970 hypothetical protein 1.87 2.87E-08 1.83E-06 An07g10280 hypothetical protein 1.43 6.40E-06 1.31E-04 An09g06130 hypothetical protein 1.64 4.24E-07 1.46E-05 An18g01000 hypothetical protein 0.56 1.05E-06 3.03E-05 An13g01520 hypothetical protein 0.49 3.57E-06 8.23E-05 DSM code: ORF identifier in A. niger...”
• Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger
  Guillemette, BMC genomics 2007
  • “...4.3 0.9 *-1.1 0.03 An08g04260 hypothetical protein 2.0 0.6 *1.7 0.3 2.4 0.01 *1.3 0.07 An07g10280 hypothetical protein 2.0 0.7 *1.6 0.08 1.8 0.9 *1.6 0.2 An09g06130 hypothetical protein 2.0 0.3 *2 0.2 1.6 0.4 *1.4 0.09 An08g09860 hypothetical protein 2.3 0.6 *1.2 0.4 7.4 1.0...”

SPAC20G4.05c UPF0061 family protein (RefSeq) from Schizosaccharomyces pombe
Aligns to 35:534 / 568 (88.0%), covers 98.3% of PF02696, 423.4 bits

• Functional characterization of Upf1 targets in Schizosaccharomyces pombe
  Matia-González, RNA biology 2013
  • “...SPAC139.04c Agmatinase (predicted) fap2 L-saccharopine oxidase SPAC20G4.05c (*) SPBC1683.07 UPF0061 family protein mal1 Maltase -glucosidase SPCC63.13 (*) DnaJ...”

KT99_20194 hypothetical protein (RefSeq) from Shewanella benthica KT99
Aligns to 7:484 / 513 (93.2%), covers 98.7% of PF02696, 420.8 bits

• Protein evolution in deep sea bacteria: an analysis of amino acids substitution rates
  Campanaro, BMC evolutionary biology 2008
  • “...COG q (%) 1 Molybdenum ABC Transporter, Permease Protein KT99_02056 4149P 10.0 2 Hypothetical Protein KT99_20194 - 0.0 3 Phosphoribosylaminoimidazole Carboxylase, Catalytic Subunit KT99_17021 0041F 0.0 4 Dithiobiotin Synthetase KT99_10643 0132H 4.9 5 Uracil Permease KT99_16519 2233F 0.0 6 TonB2 Protein KT99_09573 0810M 10.0 7 Primosomal...”

MGG_03159 YdiU domain-containing protein from Pyricularia oryzae 70-15
Aligns to 106:661 / 705 (78.9%), covers 95.9% of PF02696, 420.1 bits

• Tpc1 is an important Zn(II)2Cys6 transcriptional regulator required for polarized growth and virulence in the rice blast fungus
  Galhano, PLoS pathogens 2017
  • “...PEBP2 (MGG_14045), NOXR (MGG_05280), NOX1 (MGG_00750), NOX2 (MGG_06559), FIMBRIN (MGG_04478) GELSOLIN (MGG_10059), ACTIN (MGG_03982), YDIU (MGG_03159) and SEP5 (MGG_03087). Supporting information S1 Fig M1422 phenotype defects are restored by re-introduction of TPC1 : GFP construct. (PDF) Click here for additional data file. S2 Fig Gene-replacement strategy...”

Q9DBC0 Protein adenylyltransferase SelO, mitochondrial from Mus musculus
Aligns to 79:625 / 667 (82.0%), covers 94.7% of PF02696, 414.2 bits

• Quantitative Chemical Proteomic Profiling of the in Vivo Targets of Reactive Drug Metabolites.
  Whitby, ACS chemical biology 2017
  • “...# 3 P17751 Tpi1 20 10.8 13 * , 20 # C71 * # 4 Q9DBC0 Selo ^ 10 20 18 * , 20 # U665 * # 5 O09131 Gsto1 ^ 20 8.0 1.2 * , 20 # C32 * # 6 Q9JMH6 Txnrd1 ^...”

BP1090 conserved hypothetical protein (NCBI) from Bordetella pertussis Tohama I
Aligns to 5:458 / 487 (93.2%), covers 98.1% of PF02696, 410.7 bits

• Genomic epidemiology of Iranian Bordetella pertussis: 50 years after the implementation of whole cell vaccine
  Safarchi, Emerging microbes & infections 2019
  • “...isolates Different provinces Genic (25) 13 nsSNPs: BP0194, BP0292, BP0518, BP0854 ( nuoN ), BP0891, BP1090, BP1261, BP1471, BP2249 ( bscI ), BP2485 Deletions: BP0880 (8), BP2946 (31), fim2 p (5) 11 sSNPs: BP0184, BP0215 ( ppc ), BP0505, BP0507, BP0678 ( prfA ), BP1054 (...”
• Mutations in the bvgA gene of Bordetella pertussis that differentially affect regulation of virulence determinants
  Stibitz, Journal of bacteriology 1994
  • “...cross the mutant alleles into BP953 to create BP1090 and BP1091, respectively, essentially as described previously (29). Mutagenesis and screening of BP953....”
  • “...Tohama I BP953 BP1056 BP1060 BP1074 BP1078 BP1079 BP1090 BP1091 B. PERTUSSIS bvgA MUTATIONS AFFECT VIRULENCE REGULATION VOL. 176, 1994 TABLE 2. TABLE 3....”

SELO_HUMAN / Q9BVL4 Protein adenylyltransferase SelO, mitochondrial; Selenoprotein O; SelO; EC 2.7.7.-; EC 2.7.7.n1 from Homo sapiens (Human) (see 2 papers)
NP_113642 protein adenylyltransferase SelO, mitochondrial from Homo sapiens
Aligns to 76:624 / 669 (82.1%), covers 95.5% of PF02696, 406.6 bits

• function: Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr and Tyr residues of target proteins (AMPylation) (PubMed:30270044). May be a redox-active mitochondrial selenoprotein which interacts with a redox target protein (PubMed:24751718).
  catalytic activity: ATP + L-tyrosyl-[protein] = diphosphate + O-(5'-adenylyl)-L- tyrosyl-[protein] (RHEA:54288)
  catalytic activity: ATP + L-threonyl-[protein] = 3-O-(5'-adenylyl)-L-threonyl- [protein] + diphosphate (RHEA:54292)
  catalytic activity: ATP + L-seryl-[protein] = 3-O-(5'-adenylyl)-L-seryl-[protein] + diphosphate (RHEA:58120)
  cofactor: Mg(2+)
• Proteomics Reveals that Methylmalonyl-CoA Mutase Modulates Cell Architecture and Increases Susceptibility to Stress
  Costanzo, International journal of molecular sciences 2020
  • “...UP 1.7 Q14790 Caspase-8 CASP8 UP 1.8 Q86UT6 NLR family member X1 NLRX1 UP 2.1 Q9BVL4 Selenoprotein O SELO UP 2.4 Q6PML9 Zinc transporter 9 SLC30A9 UP 2.4 O95139 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 NDUFB6 UP 2.7 A8MXV4 Nucleoside diphosphate-linked moiety X motif...”
• Oral Glucose Mobilizes Triglyceride Stores From the Human Intestine
  Xiao, Cellular and molecular gastroenterology and hepatology 2019
  • “...light chain FTL 0.8169 .0124 Ion transport P02794 Ferritin heavy chain FTH1 0.8959 .0144 Mitochondria/redox Q9BVL4 Selenoprotein O b SELENOO 5.0987 .0002 Mitochondria/redox Q9HB07 UPF0160 protein MYG1; mitochondrial b C12orf10 5.9843 5.8E-16 Mitochondria/redox P22090 40S ribosomal protein S4 b RPS4Y1 6.7537 .0018 Transcription/RNA processing/translation Q9P003 Protein...”
• Chemical Proteomics Identifies Druggable Vulnerabilities in a Genetically Defined Cancer.
  Bar-Peled, Cell 2017
  • “...C66 No Q99757 TXN2 Yes C90 Yes P00352 ALDH1A1 Yes Yes Q9BRX8 FAM213A Yes Yes Q9BVL4 SELO ^ Yes Yes P78417 GSTO1 Yes Yes Q5TFE4 NT5DC1 Yes Yes Q9H7Z7 PTGES2 Yes Yes ^ Contains conserved functional (seleno)cysteine residue * Competed defined as showing R value 2.5...”
• Signatures of Evolutionary Adaptation in Quantitative Trait Loci Influencing Trace Element Homeostasis in Liver.
  Engelken, Molecular biology and evolution 2016
  • “...SELK SELK (Q9Y6D0) Targeted Quantified rs13317328 c SELM SELM (Q8WWX9) Quantified rs8135353 c SELO SELO (Q9BVL4) Quantified Quantified rs4838862 c VIMP SELS (Q9BQE4) Quantified Quantified rs34713741 x SELT SELT (P62341) Targeted Quantified rs7639294 k SEP15 SEP15 (O60613) Targeted Quantified rs17129522 c , rs5845 y SEPHS1 SPS1...”
• Characterization of mammalian selenoprotein o: a redox-active mitochondrial protein.
  Han, PloS one 2014
  • GeneRIF: SelO is a redox-active mitochondrial selenoprotein.
• Serum lipid and lipoprotein levels in Japanese patients with familial hypercholesterolemia.
  Mabuchi, Atherosclerosis 1979 (PubMed)
  • GeneRIF: The SELO protein has a protein domain with significant albeit remote sequence similarity to protein kinase-like proteins.

RSP_2375 hypothetical protein (NCBI) from Rhodobacter sphaeroides 2.4.1
Aligns to 1:451 / 481 (93.8%), covers 98.7% of PF02696, 391.7 bits

• Convergence of the transcriptional responses to heat shock and singlet oxygen stresses
  Dufour, PLoS genetics 2012
  • “...Energy metabolism Amino acids and amines RSP_3957 Electron transport RSP_0296, RSP_0610, RSP_1194, RSP_1489, RSP_1529, RSP_1576, RSP_2375, RSP_2685, RSP_2945 Glycolysis/gluconeogenesis RSP_0361 Fatty acid and cell envelope Biosynthesis RSP_0720, RSP_0929, RSP_2776 Biosynthesis and degradation of murein sacculus and peptidoglycan RSP_1240 Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides...”

AFLA_022590 YdiU domain protein from Aspergillus flavus NRRL3357
Aligns to 36:488 / 522 (86.8%), covers 80.8% of PF02696, 365.1 bits

• A Network Approach of Gene Co-expression in the Zea mays/Aspergillus flavus Pathosystem to Map Host/Pathogen Interaction Pathways
  Musungu, Frontiers in genetics 2016
  • “...dioxygenase AFLA_090380 1562 Chromatin remodeling complex subunit (Arp9), putative AFLA_103750 1554 Phospholipase D1 (PLD1), putative AFLA_022590 1554 YdiU domain protein AFLA_080160 1553 UDP- N -acetylglucosaminyltransferase AFLA_016890 1553 Rho GTPase activator (Lrg11), putative AFLA_061950 1548 Autophagy-related protein 3 AFLA_051550 1547 Methylthioribulose-1-phosphate dehydratase AFLA_027290 1544 Proteasome activator subunit...”

thalar_00489 YdiU family protein from Litoreibacter arenae DSM 19593
Aligns to 2:442 / 471 (93.6%), covers 98.1% of PF02696, 355.2 bits

• Genome sequence of the Litoreibacter arenae type strain (DSM 19593(T)), a member of the Roseobacter clade isolated from sea sand
  Riedel, Standards in genomic sciences 2013
  • “...Additional gene sequences of interest encode a homogentisate 1,2-dioxygenase (thalar_03573), several haloacid dehalogenase superfamily proteins (thalar_00489, thalar_00580, thalar_01120, thalar_01943, thalar_02401) and a 2-haloalkanoic acid dehalogenase type II (thalar_00287). The presence of such genes could indicate a respiratory degradation of recalcitrant compounds by strain DSM 19593 T...”

CC3334 conserved hypothetical protein, interruption (NCBI ptt file) from Caulobacter crescentus CB15
Aligns to 8:160 / 160 (95.6%), covers 30.3% of PF02696, 163.1 bits

• Transcriptional profiling of Caulobacter crescentus during growth on complex and minimal media
  Hottes, Journal of bacteriology 2004
  • “...while others, such as gcvT (CC3335) and gcvH (CC3334), are involved in degradation. Conversely, many of the cell cycleregulated genes whose expression was down...”

LOC101880049 LOW QUALITY PROTEIN: protein adenylyltransferase SelO-like from Melopsittacus undulatus
Aligns to 12:224 / 224 (95.1%), covers 40.4% of PF02696, 99.2 bits

• Genetic Mapping and Biochemical Basis of Yellow Feather Pigmentation in Budgerigars
  Cooke, Cell 2017
  • “...(n = 4) budgerigars for genes in the blue -associated haplotype ( Figure 3B ). LOC101880049 and TRNAN-GUU were not expressed (FPKM < 0.04). Error bars represent 95% confidence intervals calculated by cuffdiff ( Trapnell et al., 2013 ). Violin plots to the right show the...”

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