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Family Search for PF03235 (DUF262)

PF03235.14 hits 67 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

HP1397 hypothetical protein (NCBI ptt file) from Helicobacter pylori 26695
Aligns to 7:227 / 271 (81.5%), covers 98.6% of PF03235, 140.3 bits

HP1409 hypothetical protein (NCBI ptt file) from Helicobacter pylori 26695
HP0426 hypothetical protein (NCBI ptt file) from Helicobacter pylori 26695
Aligns to 11:236 / 578 (39.1%), covers 99.1% of PF03235, 135.3 bits

c5426 Conserved hypothetical protein (NCBI ptt file) from Escherichia coli CFT073
Aligns to 15:226 / 557 (38.1%), covers 99.5% of PF03235, 134.5 bits

jhp1301 putative (NCBI ptt file) from Helicobacter pylori J99
Aligns to 8:235 / 314 (72.6%), covers 96.4% of PF03235, 133.4 bits

Cj0008 hypothetical protein Cj0008 (NCBI ptt file) from Campylobacter jejuni subsp. jejuni NCTC 11168
Aligns to 10:260 / 583 (43.1%), covers 98.2% of PF03235, 130.9 bits

HPYLSS1_01469 DUF262 domain-containing protein from Helicobacter pylori SS1
Aligns to 8:242 / 584 (40.2%), covers 97.3% of PF03235, 130.7 bits

NMA2230 hypothetical protein (NCBI ptt file) from Neisseria meningitidis Z2491
Aligns to 11:243 / 571 (40.8%), covers 98.6% of PF03235, 129.6 bits

jhp0462 putative (NCBI ptt file) from Helicobacter pylori J99
Aligns to 8:217 / 706 (29.7%), covers 97.7% of PF03235, 129.5 bits

HPB8_729 DUF262 domain-containing protein from Helicobacter pylori B8
D7FDN0 Uncharacterized protein from Helicobacter pylori (strain B8)
Aligns to 8:220 / 687 (31.0%), covers 97.3% of PF03235, 129.3 bits

K747_06625 DUF262 domain-containing protein from Helicobacter pylori UM032
Aligns to 6:218 / 689 (30.9%), covers 96.8% of PF03235, 127.9 bits

APECO1_3911 hypothetical protein (NCBI) from Escherichia coli APEC O1
Aligns to 28:276 / 604 (41.2%), covers 99.5% of PF03235, 127.5 bits

UTI89_C2960 hypothetical protein (NCBI) from Escherichia coli UTI89
Aligns to 8:256 / 629 (39.6%), covers 99.5% of PF03235, 127.3 bits

cg0841 hypothetical protein (RefSeq) from Corynebacterium glutamicum ATCC 13032
Aligns to 8:222 / 811 (26.5%), covers 99.5% of PF03235, 126.8 bits

CCI6_RS16000 DUF262 domain-containing protein from Frankia sp. CcI6
Aligns to 44:207 / 374 (43.9%), covers 99.1% of PF03235, 124.8 bits

NP_463839 similar to unknown protein (NCBI ptt file) from Listeria monocytogenes EGD-e
Aligns to 3:239 / 553 (42.9%), covers 95.5% of PF03235, 124.1 bits

BCAL1172 hypothetical protein (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 7:234 / 590 (38.6%), covers 95.5% of PF03235, 124.0 bits

ECSTEC94C_1402, WP_000834395 DUF262 domain-containing protein from Escherichia coli STEC_94C
Aligns to 8:256 / 629 (39.6%), covers 100.0% of PF03235, 122.6 bits

jhp1430 putative (NCBI ptt file) from Helicobacter pylori J99
Aligns to 12:233 / 282 (78.7%), covers 98.6% of PF03235, 122.4 bits

jhp0174 putative (NCBI ptt file) from Helicobacter pylori J99
Aligns to 5:214 / 567 (37.0%), covers 99.5% of PF03235, 116.9 bits

SCO5329 hypothetical protein (NCBI) from Streptomyces coelicolor A3(2)
Aligns to 12:239 / 565 (40.4%), covers 99.1% of PF03235, 116.5 bits

B8F899 Uncharacterized protein from Haemophilus parasuis serovar 5 (strain SH0165)
Aligns to 8:222 / 680 (31.6%), covers 99.5% of PF03235, 116.1 bits

TM0991 hypothetical protein (NCBI ptt file) from Thermotoga maritima MSB8
Aligns to 13:230 / 584 (37.3%), covers 97.7% of PF03235, 115.2 bits

CTN_1586 hypothetical protein (RefSeq) from Thermotoga neapolitana DSM 4359
Aligns to 13:230 / 584 (37.3%), covers 97.7% of PF03235, 114.7 bits

TRQ2_1804 hypothetical protein (RefSeq) from Thermotoga sp. RQ2
Aligns to 13:230 / 584 (37.3%), covers 97.3% of PF03235, 114.0 bits

YPO3437 conserved hypothetical protein (NCBI ptt file) from Yersinia pestis CO92
Aligns to 23:241 / 636 (34.4%), covers 99.5% of PF03235, 113.7 bits

Z5943m Uncharacterized conserved protein (NCBI ptt file) from Escherichia coli O157:H7 EDL933
Aligns to 8:223 / 697 (31.0%), covers 99.1% of PF03235, 113.4 bits

ECABU_c49760 DUF262 domain-containing protein from Escherichia coli str. 'clone D i14'
Aligns to 8:223 / 697 (31.0%), covers 99.1% of PF03235, 113.4 bits

EcSMS35_4888 hypothetical protein (RefSeq) from Escherichia coli SECEC SMS-3-5
Aligns to 8:223 / 697 (31.0%), covers 99.1% of PF03235, 113.4 bits

EcolC_3721 hypothetical protein (RefSeq) from Escherichia coli C str. ATCC 8739
Aligns to 8:223 / 697 (31.0%), covers 99.1% of PF03235, 113.4 bits

c5421 Hypothetical protein (NCBI ptt file) from Escherichia coli CFT073
Aligns to 50:265 / 739 (29.2%), covers 99.1% of PF03235, 113.2 bits

ECED1_5210 hypothetical protein (RefSeq) from Escherichia coli ED1a
Aligns to 46:261 / 735 (29.4%), covers 99.1% of PF03235, 112.8 bits

ECP_4674 hypothetical protein (NCBI) from Escherichia coli 536
Aligns to 44:259 / 733 (29.5%), covers 99.1% of PF03235, 112.8 bits

BC_0944 DUF262 domain-containing protein from Bacillus cereus ATCC 14579
Aligns to 13:221 / 527 (39.7%), covers 98.6% of PF03235, 112.6 bits

CE10_5085 DUF262 domain-containing protein from Escherichia coli O7:K1 str. CE10
Aligns to 8:223 / 698 (30.9%), covers 99.1% of PF03235, 111.0 bits

ECIAI39_4815 hypothetical protein (RefSeq) from Escherichia coli IAI39
Aligns to 50:265 / 740 (29.2%), covers 99.1% of PF03235, 110.8 bits

jhp0873 putative (NCBI ptt file) from Helicobacter pylori J99
Aligns to 4:264 / 291 (89.7%), covers 97.3% of PF03235, 110.6 bits

LF82_736 DUF262 domain-containing protein from Escherichia coli O83:H1 str. NRG 857C
Aligns to 8:223 / 697 (31.0%), covers 99.1% of PF03235, 110.6 bits

UU527 conserved hypothetical (NCBI ptt file) from Ureaplasma parvum serovar 3 str. ATCC 700970
Aligns to 307:527 / 971 (22.8%), covers 97.7% of PF03235, 109.9 bits

jhp0572 putative (NCBI ptt file) from Helicobacter pylori J99
Aligns to 5:218 / 683 (31.3%), covers 95.9% of PF03235, 106.8 bits

ECOK1_4852, ECOPMV1_04800 DUF262 domain-containing protein from Escherichia coli IHE3034
Aligns to 8:223 / 697 (31.0%), covers 99.1% of PF03235, 105.7 bits

APECO1_2080 hypothetical protein (NCBI) from Escherichia coli APEC O1
Aligns to 44:259 / 733 (29.5%), covers 99.1% of PF03235, 105.5 bits

jhp0955 putative (NCBI ptt file) from Helicobacter pylori J99
Aligns to 6:209 / 217 (94.0%), covers 95.0% of PF03235, 103.6 bits

D7FGE9 DUF262 domain-containing protein from Helicobacter pylori (strain B8)
Aligns to 11:215 / 217 (94.5%), covers 77.8% of PF03235, 100.7 bits

UTI89_C5048 hypothetical protein (NCBI) from Escherichia coli UTI89
Aligns to 50:265 / 739 (29.2%), covers 99.1% of PF03235, 99.4 bits

alr4229 hypothetical protein (NCBI ptt file) from Nostoc sp. PCC 7120
Aligns to 11:224 / 393 (54.5%), covers 96.4% of PF03235, 99.2 bits

BF9343_1755 DUF262 domain-containing protein from Bacteroides fragilis NCTC 9343
Aligns to 11:219 / 551 (37.9%), covers 99.1% of PF03235, 98.4 bits

HP0629 hypothetical protein (NCBI ptt file) from Helicobacter pylori 26695
Aligns to 5:217 / 681 (31.3%), covers 95.5% of PF03235, 97.7 bits

ACG06_19220 DUF262 domain-containing protein from Pseudomonas aeruginosa
Aligns to 7:222 / 564 (38.3%), covers 98.2% of PF03235, 97.3 bits

Z5949 orf; conserved hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 EDL933
Aligns to 8:93 / 94 (91.5%), covers 34.4% of PF03235, 96.1 bits

MW0374 hypothetical protein (NCBI ptt file) from Staphylococcus aureus subsp. aureus MW2
Aligns to 6:213 / 608 (34.2%), covers 93.7% of PF03235, 95.4 bits

DIP1102 Conserved hypothetical protein (NCBI) from Corynebacterium diphtheriae NCTC 13129
Aligns to 10:254 / 602 (40.7%), covers 98.2% of PF03235, 91.7 bits

PFLU4242 hypothetical protein (RefSeq) from Pseudomonas fluorescens SBW25
Aligns to 8:218 / 527 (40.0%), covers 97.3% of PF03235, 90.3 bits

SCO6638 hypothetical protein (NCBI) from Streptomyces coelicolor A3(2)
Aligns to 9:254 / 605 (40.7%), covers 99.5% of PF03235, 88.9 bits

orf2 / A0A023I190 6-hydroxypseudooxynicotine oxidase from Shinella sp. HZN7 (see paper)
Aligns to 16:235 / 562 (39.1%), covers 96.8% of PF03235, 80.9 bits

HP0513 hypothetical protein (NCBI ptt file) from Helicobacter pylori 26695
Aligns to 1:173 / 658 (26.3%), covers 82.4% of PF03235, 80.2 bits

alr5156 hypothetical protein (NCBI ptt file) from Nostoc sp. PCC 7120
Aligns to 10:164 / 168 (92.3%), covers 47.5% of PF03235, 73.1 bits

alr1266 hypothetical protein (NCBI ptt file) from Nostoc sp. PCC 7120
Aligns to 10:181 / 599 (28.7%), covers 92.3% of PF03235, 68.6 bits

BanLI Type II restriction enzyme recognizing RTCAGG, ?; CCTGAY from Bifidobacterium animalis subsp. lactis CNCM I-2494
Aligns to 12:121 / 372 (29.6%), covers 32.1% of PF03235, 63.5 bits

EKO11_3023 DUF262 domain-containing protein from Escherichia coli KO11FL
Aligns to 14:172 / 593 (26.8%), covers 95.9% of PF03235, 63.4 bits

VCA0199 hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 260:412 / 638 (24.0%), covers 94.1% of PF03235, 60.6 bits

AYJ09_01105 DUF262 domain-containing protein from Candidatus Liberibacter solanacearum
Aligns to 10:117 / 361 (29.9%), covers 38.9% of PF03235, 56.2 bits

STM14_2479, STMUK_2024 DUF262 domain-containing protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Aligns to 31:162 / 171 (77.2%), covers 28.1% of PF03235, 56.0 bits

ECO103_1901 hypothetical protein (RefSeq) from Escherichia coli O103:H2 str. 12009
Aligns to 29:208 / 527 (34.2%), covers 91.9% of PF03235, 50.6 bits

HP0938 hypothetical protein (NCBI ptt file) from Helicobacter pylori 26695
Aligns to 5:81 / 115 (67.0%), covers 22.2% of PF03235, 50.5 bits

D7FDB0 DUF262 domain-containing protein from Helicobacter pylori (strain B8)
Aligns to 4:78 / 115 (65.2%), covers 22.2% of PF03235, 49.7 bits

HP0187 hypothetical protein (NCBI ptt file) from Helicobacter pylori 26695
Aligns to 1:92 / 95 (96.8%), covers 37.6% of PF03235, 43.2 bits

Z5950 orf; conserved hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 EDL933
Aligns to 5:121 / 452 (25.9%), covers 37.1% of PF03235, 42.3 bits

Or search for genetic data about PF03235 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory