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Family Search for PF03478 (DUF295)

PF03478 hits 69 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Q2QXK7 F-box domain containing protein from Oryza sativa subsp. japonica
Aligns to 327:384 / 419 (13.8%), covers 94.5% of PF03478, 57.6 bits

AT1G27580 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 285:339 / 364 (15.1%), covers 98.2% of PF03478, 55.3 bits

AT4G25920 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 309:354 / 390 (11.8%), covers 96.4% of PF03478, 52.3 bits

AT5G46140 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 212:257 / 289 (15.9%), covers 94.5% of PF03478, 51.2 bits

AT2G45940 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 264:312 / 352 (13.9%), covers 92.7% of PF03478, 50.9 bits

AT1G30170 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 293:337 / 366 (12.3%), covers 96.4% of PF03478, 50.4 bits

AT2G04830 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 9:73 / 100 (65.0%), covers 98.2% of PF03478, 49.9 bits

AT1G27540 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 304:358 / 383 (14.4%), covers 98.2% of PF03478, 49.1 bits

AT5G46130 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 300:344 / 376 (12.0%), covers 94.5% of PF03478, 48.8 bits

AT1G68960 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 303:349 / 376 (12.5%), covers 96.4% of PF03478, 48.6 bits

FB111_ARATH / Q3EBY8 F-box protein At2g17690; Protein SUPPRESSOR OF DRM1 DRM2 CMT3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_179360 ascorbic acid mannose pathway regulator, putative (DUF295) from Arabidopsis thaliana
AT2G17690 SDC (SUPPRESSOR OF DRM1 DRM2 CMT3) (RefSeq) from Arabidopsis thaliana
Aligns to 349:404 / 421 (13.3%), covers 96.4% of PF03478, 48.2 bits

AT4G16080 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 278:322 / 354 (12.7%), covers 94.5% of PF03478, 48.1 bits

AT5G25290 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 320:374 / 397 (13.9%), covers 98.2% of PF03478, 47.9 bits

AT2G24080 F-box family protein-related (RefSeq) from Arabidopsis thaliana
Aligns to 292:349 / 374 (15.5%), covers 98.2% of PF03478, 47.3 bits

AT4G14260 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 305:349 / 379 (11.9%), covers 94.5% of PF03478, 46.8 bits

LOC106438264 uncharacterized protein LOC106438264 from Brassica napus
Aligns to 301:349 / 383 (12.8%), covers 94.5% of PF03478, 45.7 bits

AT5G03390 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 305:352 / 373 (12.9%), covers 96.4% of PF03478, 45.4 bits

AT5G53790 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 296:341 / 380 (12.1%), covers 94.5% of PF03478, 45.3 bits

LOC107418241 F-box protein At2g26160-like from Ziziphus jujuba var. spinosa
Aligns to 312:373 / 396 (15.7%), covers 92.7% of PF03478, 44.2 bits

AT2G26160 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 283:328 / 331 (13.9%), covers 72.7% of PF03478, 43.6 bits

AT4G17565 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 297:348 / 378 (13.8%), covers 100.0% of PF03478, 43.1 bits

AT5G67040 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 93:138 / 165 (27.9%), covers 96.4% of PF03478, 42.7 bits

AT4G35733 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 287:338 / 358 (14.5%), covers 96.4% of PF03478, 42.3 bits

AT3G25750 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 270:321 / 348 (14.9%), covers 98.2% of PF03478, 42.2 bits

AT4G25930 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 293:344 / 367 (14.2%), covers 90.9% of PF03478, 41.6 bits

SKI23_ARATH / Q3EBZ2 F-box protein SKIP23; SKP1-interacting partner 23 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT2G17030 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 306:365 / 407 (14.7%), covers 96.4% of PF03478, 40.1 bits

AT5G55440 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 288:343 / 365 (15.3%), covers 94.5% of PF03478, 39.9 bits

AT2G04840 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 302:362 / 389 (15.7%), covers 98.2% of PF03478, 39.4 bits

AT1G44080 F-box protein-related / C-type lectin-related (RefSeq) from Arabidopsis thaliana
Aligns to 271:323 / 347 (15.3%), covers 98.2% of PF03478, 38.4 bits

AT1G65760 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 288:346 / 362 (16.3%), covers 78.2% of PF03478, 38.1 bits

AT2G04810 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 311:370 / 397 (15.1%), covers 98.2% of PF03478, 37.5 bits

AT1G69090 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 318:370 / 401 (13.2%), covers 100.0% of PF03478, 37.0 bits

AT1G65740 F-box family protein (RefSeq) from Arabidopsis thaliana
NP_176751 ascorbic acid mannose pathway regulator (DUF295) from Arabidopsis thaliana
Aligns to 298:353 / 371 (15.1%), covers 70.9% of PF03478, 36.9 bits

AT1G65770 F-box family protein (RefSeq) from Arabidopsis thaliana
NP_176753 ascorbic acid mannose pathway regulator 1 from Arabidopsis thaliana
Aligns to 286:340 / 360 (15.3%), covers 94.5% of PF03478, 36.8 bits

AT1G05540 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 293:337 / 367 (12.3%), covers 96.4% of PF03478, 36.6 bits

AT5G53780 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 307:351 / 376 (12.0%), covers 96.4% of PF03478, 36.3 bits

AT2G05970 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 293:344 / 377 (13.8%), covers 100.0% of PF03478, 36.3 bits

AT4G22170 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 280:332 / 363 (14.6%), covers 100.0% of PF03478, 36.1 bits

AT2G33190 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 292:353 / 379 (16.4%), covers 96.4% of PF03478, 35.8 bits

AT5G24040 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 289:344 / 373 (15.0%), covers 94.5% of PF03478, 35.4 bits

AT4G22060 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 310:368 / 399 (14.8%), covers 100.0% of PF03478, 35.0 bits

AT1G64840 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 287:347 / 384 (15.9%), covers 72.7% of PF03478, 34.7 bits

AT5G60060 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 301:357 / 374 (15.2%), covers 98.2% of PF03478, 34.2 bits

AT4G22030 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 541:595 / 626 (8.8%), covers 100.0% of PF03478, 33.9 bits

Q6DR20 F-box protein At2g17036 from Arabidopsis thaliana
Aligns to 301:359 / 404 (14.6%), covers 98.2% of PF03478, 33.7 bits

AT2G17036 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 300:358 / 428 (13.8%), covers 98.2% of PF03478, 33.6 bits

KIB3_ARATH / Q9ZW91 F-box protein KIB3; Protein KINK SUPPRESSED IN BZR1-1D 3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G67160 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 299:357 / 450 (13.1%), covers 92.7% of PF03478, 33.2 bits

AT4G22165 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 279:332 / 363 (14.9%), covers 100.0% of PF03478, 33.2 bits

AT5G66830 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 304:358 / 394 (14.0%), covers 98.2% of PF03478, 32.8 bits

AT2G16290 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 318:392 / 415 (18.1%), covers 96.4% of PF03478, 32.1 bits

KIB4_ARATH / Q9SRV0 F-box protein KIB4; Protein KINK SUPPRESSED IN BZR1-1D 4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT3G03730 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 303:360 / 393 (14.8%), covers 92.7% of PF03478, 32.0 bits

AT2G24250 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 282:345 / 374 (17.1%), covers 94.5% of PF03478, 31.8 bits

AT2G03560 ubiquitin-protein ligase (RefSeq) from Arabidopsis thaliana
Aligns to 318:369 / 453 (11.5%), covers 100.0% of PF03478, 31.0 bits

AT2G14290 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 278:327 / 353 (14.2%), covers 100.0% of PF03478, 30.7 bits

AT5G38270 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 320:378 / 406 (14.5%), covers 100.0% of PF03478, 30.5 bits

NP_565302 F-box only protein (DUF295) from Arabidopsis thaliana
Aligns to 318:369 / 395 (13.2%), covers 100.0% of PF03478, 30.4 bits

AT4G22180 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 319:370 / 402 (12.9%), covers 69.1% of PF03478, 29.9 bits

AT2G33200 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 288:350 / 376 (16.8%), covers 100.0% of PF03478, 28.3 bits

KIB2_ARATH / Q9SU04 F-box protein KIB2; Protein KINK SUPPRESSED IN BZR1-1D 2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT4G12820 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 353:406 / 442 (12.2%), covers 89.1% of PF03478, 28.1 bits

GRMZM2G067198 uncharacterized protein LOC100274863 from Zea mays
Aligns to 294:356 / 385 (16.4%), covers 78.2% of PF03478, 27.0 bits

AT5G55150 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 275:333 / 360 (16.4%), covers 94.5% of PF03478, 26.7 bits

GRMZM2G446921 uncharacterized protein LOC100273748 from Zea mays
Aligns to 341:404 / 431 (14.8%), covers 70.9% of PF03478, 26.3 bits

AT3G03720 CAT4 (CATIONIC AMINO ACID TRANSPORTER 4); cationic amino acid transmembrane transporter (RefSeq) from Arabidopsis thaliana
Aligns to 131:181 / 801 (6.4%), covers 69.1% of PF03478, 25.3 bits

AT1G30160 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 291:344 / 366 (14.8%), covers 58.2% of PF03478, 25.3 bits

AT2G03610 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 135:190 / 216 (25.9%), covers 87.3% of PF03478, 25.0 bits

AT4G22660 F-box family protein (RefSeq) from Arabidopsis thaliana
Aligns to 315:369 / 396 (13.9%), covers 85.5% of PF03478, 25.0 bits

GRMZM2G062031, LOC100276496 uncharacterized protein LOC100276496 from Zea mays
Aligns to 291:354 / 382 (16.8%), covers 81.8% of PF03478, 24.3 bits

KIB1_ARATH / Q9SU05 F-box/kelch-repeat protein KIB1; Protein KINK SUPPRESSED IN BZR1-1D 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT4G12810 F-box family protein (RefSeq) from Arabidopsis thaliana
NP_193017 F-box family protein from Arabidopsis thaliana
Aligns to 287:342 / 382 (14.7%), covers 94.5% of PF03478, 24.1 bits

AT5G54320 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 297:348 / 369 (14.1%), covers 72.7% of PF03478, 23.7 bits

Or search for genetic data about PF03478 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory