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Family Search for PF03649 (UPF0014)

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Running HMMer for PF03649

PF03649 hits 19 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Teth39_1957 hypothetical protein from Thermoanaerobacter ethanolicus ATCC 33223
Aligns to 3:240 / 250 (95.2%), covers 99.6% of PF03649, 289.8 bits

HWX41_RS22925 iron export ABC transporter permease subunit FetB from Bacillus paramycoides
Aligns to 9:251 / 264 (92.0%), covers 100.0% of PF03649, 283.5 bits

LMH90_015220 iron export ABC transporter permease subunit FetB from Enterobacter hormaechei
Aligns to 8:245 / 260 (91.5%), covers 99.2% of PF03649, 281.9 bits

stu1665 predicted membrane protein of the YbbM family from Streptococcus thermophilus LMG 18311
Aligns to 7:244 / 251 (94.8%), covers 99.6% of PF03649, 275.5 bits

YbbM / b0491 putative iron ABC exporter membrane subunit FetB from Escherichia coli K-12 substr. MG1655 (see 4 papers)
FETB_ECOLI / P77307 Probable iron export permease protein FetB from Escherichia coli (strain K12) (see paper)
TC 3.A.1.139.2 / P77307 UPF0014 inner membrane protein ybbM, component of The FetA (YbbL)/FetB (YbbM) iron exporter (SwissProt family UDF0014; 6 or 7 putative TMSs) from Escherichia coli (strain K12) (see 3 papers)
b0491 putative metal resistance protein from Escherichia coli str. K-12 substr. MG1655
NP_415024 putative iron ABC exporter membrane subunit FetB from Escherichia coli str. K-12 substr. MG1655
Aligns to 8:245 / 259 (91.9%), covers 99.2% of PF03649, 273.9 bits

TM0193 conserved hypothetical protein from Thermotoga maritima MSB8
Aligns to 9:255 / 263 (93.9%), covers 99.6% of PF03649, 271.9 bits

SAK_RS04090, W903_RS03770 iron export ABC transporter permease subunit FetB from Streptococcus agalactiae A909
Aligns to 9:246 / 257 (92.6%), covers 99.6% of PF03649, 270.7 bits

CND04990 hypothetical protein from Cryptococcus neoformans var. neoformans JEC21
Aligns to 10:252 / 311 (78.1%), covers 98.8% of PF03649, 247.3 bits

Sb09g001990 No description from Sorghum bicolor
Aligns to 32:269 / 282 (84.4%), covers 98.3% of PF03649, 242.0 bits

VV1373 ABC-type uncharacterized transport system, permease component from Vibrio vulnificus YJ016
Aligns to 39:280 / 294 (82.3%), covers 99.2% of PF03649, 231.7 bits

STAR2_ORYSJ / Q5W7C1 UPF0014 membrane protein STAR2; Protein SENSITIVE TO ALUMINUM RHIZOTOXICITY 2 from Oryza sativa subsp. japonica (Rice) (see 2 papers)
TC 3.A.1.139.1 / Q5W7C1 Os05g0119000 protein, component of UDP-glucose exporter, STAR1/STAR2 (sensitive to aluminum rhizotoxicity) (Probable Type I topology) from Oryza sativa subsp. japonica (see paper)
Aligns to 34:271 / 285 (83.5%), covers 98.3% of PF03649, 230.8 bits

ALS3_ARATH / Q9ZUT3 Protein ALUMINUM SENSITIVE 3; ABC transporter I family member 16; ABC transporter ABCI.16; AtABCI16; ybbM homolog protein from Arabidopsis thaliana (Mouse-ear cress) (see 4 papers)
TC 3.A.1.139.4 / Q9ZUT3 Protein ALUMINUM SENSITIVE 3, component of Plasma membrane ABC exporter, sensitive to aluminum rhizotoxicity 1/2, STAR1/STAR2 (Larsen et al., 2005). Induced in response to aluminum exposure from Arabidopsis thaliana
AT2G37330 ALS3 (ALUMINUM SENSITIVE 3) from Arabidopsis thaliana
NP_181270 aluminum sensitive 3 from Arabidopsis thaliana
Aligns to 22:259 / 273 (87.2%), covers 98.3% of PF03649, 225.4 bits

SA2242 hypothetical protein from Staphylococcus aureus subsp. aureus N315
Aligns to 3:241 / 258 (92.6%), covers 99.2% of PF03649, 220.2 bits

SACOL2461 hypothetical protein from Staphylococcus aureus subsp. aureus COL
Aligns to 3:241 / 258 (92.6%), covers 99.2% of PF03649, 220.1 bits

K7B00_01590 iron export ABC transporter permease subunit FetB from Acidithiobacillus ferrooxidans
Aligns to 14:251 / 259 (91.9%), covers 97.5% of PF03649, 216.7 bits

SAR2543 putative membrane protein from Staphylococcus aureus subsp. aureus MRSA252
Aligns to 3:241 / 258 (92.6%), covers 99.2% of PF03649, 216.2 bits

LPN03_11025 ABC transporter permease from Arthrobacter sp. A2-55
Aligns to 11:245 / 250 (94.0%), covers 97.1% of PF03649, 132.4 bits

MAB_2569c hypothetical protein from Mycobacterium abscessus ATCC 19977
Aligns to 10:244 / 252 (93.3%), covers 97.5% of PF03649, 131.4 bits

MT3080 ABC transporter, ATP-binding protein from Mycobacterium tuberculosis CDC1551
Rv3000 POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN from Mycobacterium tuberculosis H37Rv
Aligns to 107:203 / 219 (44.3%), covers 38.0% of PF03649, 111.1 bits

Or search for genetic data about PF03649 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory