PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF03653 (UPF0093)

PF03653.13 hits 18 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

BDOA9_0112090 protoporphyrinogen oxidase HemJ from Bradyrhizobium sp. DOA9
Aligns to 2:144 / 144 (99.3%), covers 98.6% of PF03653, 204.8 bits

bll0636 bll0636 (NCBI ptt file) from Bradyrhizobium japonicum USDA 110
Aligns to 1:140 / 140 (100.0%), covers 97.9% of PF03653, 202.4 bits

RPA0297 conserved hypothetical protein (NCBI) from Rhodopseudomonas palustris CGA009
Aligns to 8:150 / 150 (95.3%), covers 98.6% of PF03653, 200.9 bits

HP1484 conserved hypothetical integral membrane protein (NCBI ptt file) from Helicobacter pylori 26695
Aligns to 4:148 / 148 (98.0%), covers 98.6% of PF03653, 192.5 bits

CCNA_03877 hypothetical protein (RefSeq) from Caulobacter crescentus NA1000
Aligns to 21:169 / 171 (87.1%), covers 97.9% of PF03653, 176.9 bits

RP883 unknown (NCBI ptt file) from Rickettsia prowazekii str. Madrid E
Aligns to 1:144 / 145 (99.3%), covers 100.0% of PF03653, 176.6 bits

Pden_0001 conserved hypothetical protein 701 (NCBI) from Paracoccus denitrificans PD1222
Aligns to 5:148 / 148 (97.3%), covers 96.6% of PF03653, 176.1 bits

HEMJ_SYNY3 / P72793 Protoporphyrinogen IX oxidase; PPO; Protox; EC 1.3.99.- from Synechocystis sp. (strain PCC 6803 / Kazusa) (see 2 papers)
P72793 protoporphyrinogen oxidase (EC 1.3.3.4) from Synechocystis sp. (see paper)
hemJ / P72793 protoporphyrinogen oxidase (EC 1.3.3.4) from Synechocystis sp. (strain PCC 6803 / Kazusa) (see 2 papers)
slr1790 hypothetical protein (NCBI ptt file) from Synechocystis sp. PCC 6803
Aligns to 16:164 / 210 (71.0%), covers 97.9% of PF03653, 175.0 bits

SYNPCC7002_A0644 hypothetical protein (RefSeq) from Synechococcus sp. PCC 7002
Aligns to 9:157 / 204 (73.0%), covers 97.9% of PF03653, 169.0 bits

ACIAD0878 conserved hypothetical protein; putative membrane protein (NCBI) from Acinetobacter sp. ADP1
Aligns to 5:150 / 150 (97.3%), covers 97.9% of PF03653, 167.2 bits

ZMO1997 hypothetical protein (RefSeq) from Zymomonas mobilis subsp. mobilis ZM4
Aligns to 8:151 / 151 (95.4%), covers 99.3% of PF03653, 166.6 bits

AM1_2801 hypothetical protein (RefSeq) from Acaryochloris marina MBIC11017
Aligns to 1:147 / 189 (77.8%), covers 97.3% of PF03653, 165.0 bits

APH_1307 hypothetical protein (NCBI) from Anaplasma phagocytophilum HZ
Aligns to 4:146 / 147 (97.3%), covers 98.6% of PF03653, 160.1 bits

FGG12_RS23205 CopD family protein from Cupriavidus campinensis
Aligns to 1:140 / 140 (100.0%), covers 96.6% of PF03653, 154.1 bits

BP2372 putative conserved inner membrane protein (NCBI) from Bordetella pertussis Tohama I
Aligns to 1:140 / 140 (100.0%), covers 96.6% of PF03653, 153.6 bits

Q9K166 Protoporphyrinogen IX oxidase from Neisseria meningitidis serogroup B (strain MC58)
Aligns to 1:142 / 142 (100.0%), covers 97.9% of PF03653, 148.0 bits

BCAL3369 hypothetical protein (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 1:140 / 140 (100.0%), covers 97.9% of PF03653, 136.0 bits

XOO1954 hypothetical protein (NCBI) from Xanthomonas oryzae pv. oryzae KACC10331
Aligns to 31:179 / 179 (83.2%), covers 98.6% of PF03653, 134.9 bits

Or search for genetic data about PF03653 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory