Family Search for PF03665 (UPF0172)

PF03665.13 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

EMC8_HUMAN / O43402 ER membrane protein complex subunit 8; Neighbor of COX4; Protein FAM158B from Homo sapiens (Human) (see paper)
Aligns to 3:202 / 210 (95.2%), covers 99.5% of PF03665, 220.0 bits

• subunit: Component of the ER membrane protein complex (EMC).
• Proteomics analyses of human optic nerve head astrocytes following biomechanical strain
  Rogers, Molecular & cellular proteomics : MCP 2012
  • “...12% for 2 Hours Q96B97 Q92743 Q99584 Q15121 P02511 O43402 P25788 P63208 P54709 P18031 Q8TDX7 SH3K1 HTRA1 S10AD PEA15 CRYAB CX4NB PSA3 SKP1 AT1B3 PTN1 NEK7...”
• Comparative proteomic analysis of PAI-1 and TNF-alpha-derived endothelial microparticles.
  Peterson, Proteomics 2008

O70378 ER membrane protein complex subunit 8 from Mus musculus
Aligns to 3:199 / 207 (95.2%), covers 99.5% of PF03665, 219.6 bits

• Proteomic Analysis of 3T3-L1 Adipocytes Treated with Insulin and TNF-α.
  Chan, Proteomes 2019
  • “...splicing factor 5 Srsf5 0.001389 + P02463 Collagen alpha-1(IV) chain Col4a1 0.001912 + + + O70378 ER membrane protein complex subunit 8 Emc8 0.003163 Q9ESW4 Acylglycerol kinase, mitochondrial Agk 0.003542 O35640 Annexin A8 Anxa8 0.003733 + + Q8BX10 Serine/threonine-protein phosphatase, mito. Pgam5 0.004051 + Q9WVA4 Transgelin-2...”

XP_002522792 ER membrane protein complex subunit 8/9 homolog from Ricinus communis
Aligns to 8:202 / 204 (95.6%), covers 100.0% of PF03665, 197.6 bits

• Comparative analysis of latex transcriptome reveals putative molecular mechanisms underlying super productivity of Hevea brasiliensis
  Tang, PloS one 2013
  • “...10 Unclear classification A3M12-2 513 NP_192096 tolB protein-related [ A. thaliana ] 4E-58 T1M12-3 104 XP_002522792 neigor of COX4, putative [ R. communis ] 5E-05 T4M8-1 503 XP_002524557 XPA-binding protein, putative [ R. communis ] 2E-60 T5M2-3 328 XP_002528475 leucoanthocyanidin dioxygenase, putative [ R. communis ]...”

EMC9_HUMAN / Q9Y3B6 ER membrane protein complex subunit 9; Protein FAM158A from Homo sapiens (Human) (see paper)
Aligns to 3:191 / 208 (90.9%), covers 100.0% of PF03665, 193.0 bits

• subunit: Component of the ER membrane protein complex (EMC).

AT5G55940 emb2731 (embryo defective 2731) (RefSeq) from Arabidopsis thaliana
Aligns to 10:206 / 208 (94.7%), covers 100.0% of PF03665, 186.7 bits

• Mediator of tolerance to abiotic stress ERF6 regulates susceptibility of Arabidopsis to Meloidogyne incognita
  Warmerdam, Molecular plant pathology 2019
  • “...At5G55840 22602265 G:T 17:332 4.3 8.07 At5G55840 19 5 22668012 A:G 63:286 4.9 5.24 At5G55970 At5G55940, At5G55950, At5G55960, At5G55970, At5G55980, At5G55990, At5G56000, At5G56010, At5G56020, At5G56030 At5G56040 22683923 C:G 31:318 4 5.72 At5G56010 22684613 C:T 29:320 4.1 5.89 At5G56020 *QTL1 to QTL4 have been identified previously (Warmerdam...”
• Transcriptional profiling analysis in Populus yunnanensis provides insights into molecular mechanisms of sexual differences in salinity tolerance
  Jiang, Journal of experimental botany 2012
  • “...substances 1.46 1.68 eugene3.01470017 AT4G31480 F3L17.50; binding, clathrin binding, structural molecule activity 1.18 1.08 estExt_fgenesh4_pm.C_LG_I1158 AT5G55940 EMB2731; molecular function unknown 3.85 3.27 gw1.VII.1749.1 AT4G39970 T5J17.140; catalytic activity, hydrolase activity 2.3 1.25 estExt_fgenesh4_pm.C_LG_VI0047 AT4G16480 INT4; carbohydrate transmembrane transporter activity, myo-inositol:hydrogen symporter activity, sugar:hydrogen symporter activity 1.01 1.08...”
• Modulation of the light-harvesting chlorophyll antenna size in Chlamydomonas reinhardtii by TLA1 gene over-expression and RNA interference
  Mitra, Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2012
  • “...a lipid. Interestingly, the TLA1 homologue in Arabidopsis (AT5G55940) was predicted to be localized in the endoplasmic reticulum (ER) [61]. For many years, all...”

XP_001697758 predicted protein from Chlamydomonas reinhardtii
Aligns to 4:200 / 213 (92.5%), covers 98.4% of PF03665, 180.8 bits

• Genetic and biochemical analysis of the TLA1 gene in Chlamydomonas reinhardtii.
  Mitra, Planta 2010
  • GeneRIF: TLA1 defines the relationship between nucleus and organelle in microalgae, indirectly affecting the development of the chlorophyll antenna size. [TLA1]

NP_001135760 ER membrane protein complex subunit 8 isoform 2 from Homo sapiens
Aligns to 3:126 / 126 (98.4%), covers 58.6% of PF03665, 150.1 bits

• Assessment of a polymorphism of SDK1 with hypertension in Japanese Individuals.
  Oguri, American journal of hypertension 2010 (PubMed)
  • GeneRIF: Observational study of gene-disease association. (HuGE Navigator)
• Association of genetic variants with hemorrhagic stroke in Japanese individuals.
  Yoshida, International journal of molecular medicine 2010 (PubMed)
  • GeneRIF: Observational study of gene-disease association. (HuGE Navigator)
• MicroRNA-related genetic variations as predictors for risk of second primary tumor and/or recurrence in patients with early-stage head and neck cancer.
  Zhang, Carcinogenesis 2010
  • GeneRIF: Observational study of gene-disease association and gene-gene interaction. (HuGE Navigator)
• Association of gene polymorphisms with chronic kidney disease in Japanese individuals.
  Yoshida, International journal of molecular medicine 2009 (PubMed)
  • GeneRIF: Observational study of gene-disease association. (HuGE Navigator)

CNAG_03380 hypothetical protein from Cryptococcus neoformans var. grubii H99
Aligns to 5:199 / 208 (93.8%), covers 98.4% of PF03665, 119.0 bits

• Antifungal Mechanism of Action of Lauryl Betaine Against Skin-Associated Fungus Malassezia restricta
  Do, Mycobiology 2019
  • “...dehydrogenase CNAG_03325 ChAPs family protein CNAG_03333 Cytoplasmic protein CNAG_03348 Hypothetical protein CNAG_03370 Calcium-binding protein NCS-1 CNAG_03380 Hypothetical protein CNAG_03528 AP-2 complex subunit alpha CNAG_04174 PEX6 Peroxin-6 CNAG_04388 SOD2 Mitochondrial manganese superoxide dismutase CNAG_04450 Chromodomain-helicase-DNA-binding protein 1 CNAG_04678 YPK1 Protein kinase CNAG_04751 Hypothetical protein CNAG_04804 SRE1 Sterol...”

AT5G51620 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 1:66 / 68 (97.1%), covers 19.9% of PF03665, 31.2 bits

• The plant microtubule-associated protein AtMAP65-3/PLE is essential for cytokinetic phragmoplast function
  Müller, Current biology : CB 2004
  • “...could be further narrowed to 10 kb, and this included three genes, At5g51600, At5g51610, and At5g51620 ( Figure 3B ). By using a combination of heteroduplex analysis and sequencing, we confirmed the At5g51600 open reading frame. PLE has 11 introns ( Figure 3C ); the transcriptional...”

E6N8B9 26S proteasome regulatory subunit N11-like protein from Caldiarchaeum subterraneum
Aligns to 2:145 / 202 (71.3%), covers 62.8% of PF03665, 30.0 bits

• Proteolytic systems of archaea: slicing, dicing, and mincing in the extreme
  Maupin-Furlow, Emerging topics in life sciences 2018 (secret)

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