Family Search for PF03701 (UPF0181)

PF03701 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YoaH / b1811 UFP0181 family protein YoaH from Escherichia coli K-12 substr. MG1655 (see paper)
b1811 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:50 / 59 (84.7%), covers 98.0% of PF03701, 100.9 bits

• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013

VCA0569 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 1:50 / 53 (94.3%), covers 100.0% of PF03701, 95.6 bits

• Sporadic type VI secretion in seventh pandemic Vibrio cholerae
  Proutière, Microbiology (Reading, England) 2023
  • “...( VCA0568 ) deleted; Rif R MB_9543 This study A1552 vxrE A1552 with vxrE ( VCA0569 ) deleted; Rif R MB_9544 This study A1552 oscR A1552 with oscR ( VCA0029 ) deleted; TransFLP; Rif R MB_3808 This study A1552 oscR vasK -NEW A1552 oscR with vasK...”
  • “...Rif R MB_9959 This study A1552- vipA-sfGFP v2 vxrE A1552- vipA-sfGFP v2 with vxrE ( VCA0569 ) deleted; Rif R MB_9551 This study A1552- vipA-sfGFP v2 oscR A1552- vipA-sfGFP v2 with oscR ( VCA0029 ) deleted; TransFLP; Rif R MB_9978 This study A1552- vipAsfGFP v2 tsrA...”
• RadD Contributes to R-Loop Avoidance in Sub-MIC Tobramycin
  Negro, mBio 2019
  • “...detoxification 1 1.8 13.6 (8.70E05) 2.4 VC2234* rnhA R-loop degradation 5.9 1.7 13.5 (0.002) 1.6 VCA0569 vxrE Unknown 1.8 1.8 10.3 (1.90E04) 1.2 VC2718 bioH Metabolism 1.9 1.2 8.7 (1.50E04) 2.2 VC1759 Prophage integrase 1.1 1.3 8 (0.001) 1.6 VCA0032 Unknown 2.8 1.4 5.6 (2.20E04) 1.5...”
• Non-toxigenic environmental Vibrio cholerae O1 strain from Haiti provides evidence of pre-pandemic cholera in Hispaniola
  Azarian, Scientific reports 2016
  • “...and RTX on chromosome 1, or at either of the classical sites, between genes VCO395_0503 (VCA0569) and VCO395_0513 (VCA0570). The deletion in the 2012Env-9/390 genomes encompasses CTX and satellite phages TLC and RS1, which are present in canonical toxigenic O1 strains 18 . The absence of...”
• Phage-bacterial interactions in the evolution of toxigenic Vibrio cholerae
  Faruque, Virulence 2012
  • “...El Tor site, and on chromosome II in the intergenic region between the genes designated VCA0569 and VCA0570, defined as the classical site. 33 Within certain classical strains (O395, GP12 and C33), CTX class is present as an array of truncated, fused prophages at the El...”
• Genome sequence of hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and comparative genomics with V. cholerae
  Grim, Journal of bacteriology 2010
  • “...to the V. cholerae O1 El Tor N16961 locus tag VCA0569 to -0570 intergenic region. The former gene corresponds to VCE_001020 in V. cholerae O1 El Tor B33. V....”

P56507 UPF0181 protein HI_1434.2 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Aligns to 1:48 / 52 (92.3%), covers 98.0% of PF03701, 88.5 bits

• Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
  Shahbaaz, PloS one 2013
  • “...Yes Yes 30. P45182 Yes Yes 31. P44169 Yes Yes 32. P44183 Yes Yes 33. P56507 Yes Yes 34. P45217 Yes Yes 35. P44242 Yes Cellular process 36. P44246 Yes Yes 37. P44288 Yes Metabolism molecule 38. P44293 Yes Yes 39. P44296 Yes Metabolism molecule 40....”

VCJ_002614 YoaH family protein from Vibrio metoecus
Aligns to 1:50 / 54 (92.6%), covers 98.0% of PF03701, 87.7 bits

• Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae
  Haley, BMC microbiology 2010
  • “...an insertion-like sequence in the V. parahaemolyticus insertion sequence element ISV-3L. Vibrio sp. RC341 GI-6 (VCJ_002614 to VCJ002618), ca. 4962 bp region of hypothetical proteins and transposases, is inserted at the homologous locus for V. cholerae O1 Classical CTX, a locus shown to harbor a variety...”

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