PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF03729 (DUF308)

PF03729 hits 33 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Q7VYU1 Membrane protein from Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
3 alignments in 19:185 / 186 (89.8%), covering up to 100.0% of PF03729, 116.2 bits

LMRG_00278 hypothetical protein from Listeria monocytogenes 10403S
3 alignments in 11:175 / 175 (94.3%), covering up to 100.0% of PF03729, 112.7 bits

LMOf6854_0637 membrane protein, putative from Listeria monocytogenes str. 1/2a F6854
lmo0596 similar to unknown proteins from Listeria monocytogenes EGD-e
3 alignments in 11:175 / 175 (94.3%), covering up to 100.0% of PF03729, 111.4 bits

lin0605 similar to unknown proteins from Listeria innocua Clip11262
3 alignments in 11:175 / 175 (94.3%), covering up to 100.0% of PF03729, 110.7 bits

Q9AK72 Integral membrane protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
3 alignments in 57:223 / 226 (73.9%), covering up to 98.6% of PF03729, 97.7 bits

MAP1317c hypothetical protein from Mycobacterium avium subsp. paratuberculosis str. k10
3 alignments in 28:196 / 197 (85.8%), covering up to 98.6% of PF03729, 89.6 bits

Rv1624c Probable conserved membrane protein from Mycobacterium tuberculosis H37Rv
3 alignments in 29:194 / 195 (85.1%), covering up to 98.6% of PF03729, 83.6 bits

EF0025 membrane protein, putative from Enterococcus faecalis V583
3 alignments in 15:175 / 175 (92.0%), covering up to 100.0% of PF03729, 82.7 bits

CPE2079 hypothetical protein from Clostridium perfringens str. 13
CPF_2336 hypothetical protein from Clostridium perfringens ATCC 13124
3 alignments in 11:164 / 164 (93.9%), covering up to 100.0% of PF03729, 81.9 bits

YP_2910 putative membrane protein from Yersinia pestis biovar Medievalis str. 91001
YPO0590 putative membrane protein from Yersinia pestis CO92
YPTB3468 putative HdeD-like membrane protein. from Yersinia pseudotuberculosis IP 32953
2 alignments in 26:154 / 189 (68.3%), covering up to 98.6% of PF03729, 80.8 bits

blr7327 blr7327 from Bradyrhizobium japonicum USDA 110
2 alignments in 46:171 / 208 (60.6%), covering up to 100.0% of PF03729, 79.6 bits

blr2987 blr2987 from Bradyrhizobium japonicum USDA 110
2 alignments in 41:167 / 205 (62.0%), covering up to 98.6% of PF03729, 79.3 bits

KQ76_RS13890 HdeD family acid-resistance protein from Staphylococcus aureus
3 alignments in 14:170 / 170 (92.4%), covering up to 100.0% of PF03729, 75.2 bits

SAOUHSC_03035 hypothetical protein from Staphylococcus aureus subsp. aureus NCTC 8325
SAUSA300_2632 hypothetical protein from Staphylococcus aureus subsp. aureus USA300_FPR3757
NWMN_2597 hypothetical protein from Staphylococcus aureus subsp. aureus str. Newman
3 alignments in 14:170 / 170 (92.4%), covering up to 100.0% of PF03729, 74.3 bits

VFMJ11_A0408 HdeD family acid-resistance protein from Aliivibrio fischeri MJ11
VFMJ11_A0408 hypothetical protein from Vibrio fischeri MJ11
2 alignments in 20:146 / 186 (68.3%), covering up to 100.0% of PF03729, 73.7 bits

SA2491 hypothetical protein from Staphylococcus aureus subsp. aureus N315
3 alignments in 14:170 / 170 (92.4%), covering up to 100.0% of PF03729, 73.7 bits

RSP_6139 hypothetical protein from Rhodobacter sphaeroides 2.4.1
2 alignments in 9:136 / 174 (73.6%), covering up to 100.0% of PF03729, 72.8 bits

SAR2780 putative membrane protein from Staphylococcus aureus subsp. aureus MRSA252
3 alignments in 14:170 / 170 (92.4%), covering up to 100.0% of PF03729, 72.7 bits

ZMO1533 hypothetical protein from Zymomonas mobilis subsp. mobilis ZM4
2 alignments in 16:140 / 182 (68.7%), covering up to 98.6% of PF03729, 72.6 bits

LCA_RS02705 DUF308 domain-containing protein from Latilactobacillus sakei subsp. sakei 23K
3 alignments in 15:178 / 178 (92.1%), covering up to 98.6% of PF03729, 72.6 bits

EF0397 conserved hypothetical protein from Enterococcus faecalis V583
3 alignments in 18:171 / 171 (90.1%), covering up to 94.5% of PF03729, 70.7 bits

MAFF_RS27500 HdeD family acid-resistance protein from Mesorhizobium japonicum MAFF 303099
2 alignments in 20:145 / 182 (69.2%), covering up to 100.0% of PF03729, 70.5 bits

c4322 HdeD protein from Escherichia coli CFT073
DR76_RS05080, EcF11_5238 acid-resistance protein HdeD from Escherichia coli F11
2 alignments in 26:154 / 190 (67.9%), covering up to 98.6% of PF03729, 68.7 bits

LSA0208 Hypothetical integral membrane protein from Lactobacillus sakei subsp. sakei 23K
3 alignments in 16:178 / 178 (91.6%), covering up to 97.3% of PF03729, 68.6 bits

YhiA / b3511 acid-resistance membrane protein from Escherichia coli K-12 substr. MG1655 (see 2 papers)
hdeD / RF|NP_417968 protein hdeD from Escherichia coli K12 (see 2 papers)
b3511 acid-resistance membrane protein from Escherichia coli str. K-12 substr. MG1655
NP_417968 acid-resistance membrane protein from Escherichia coli str. K-12 substr. MG1655
Z4923 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
ECs4391 hypothetical protein from Escherichia coli O157:H7 str. Sakai
BHW77_01320 acid-resistance protein HdeD from Escherichia coli
2 alignments in 26:154 / 190 (67.9%), covering up to 98.6% of PF03729, 68.4 bits

EC042_RS20255 acid-resistance protein HdeD from Escherichia coli 042
2 alignments in 26:154 / 190 (67.9%), covering up to 98.6% of PF03729, 68.0 bits

PMI1702 hypothetical protein from Proteus mirabilis HI4320
2 alignments in 26:155 / 192 (67.7%), covering up to 100.0% of PF03729, 67.5 bits

lpg2733 Hypothetical protein from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
2 alignments in 24:150 / 187 (67.9%), covering up to 98.6% of PF03729, 63.8 bits

lpp2789 hypothetical protein from Legionella pneumophila str. Paris
2 alignments in 24:150 / 187 (67.9%), covering up to 98.6% of PF03729, 63.8 bits

BAD_1583 hypothetical protein from Bifidobacterium adolescentis ATCC 15703
3 alignments in 115:284 / 285 (59.6%), covering up to 98.6% of PF03729, 60.5 bits

BL1731 hypothetical protein from Bifidobacterium longum NCC2705
3 alignments in 161:326 / 326 (50.9%), covering up to 98.6% of PF03729, 58.9 bits

ACSP50_3940 HdeD family acid-resistance protein from Actinoplanes sp. SE50/110
Aligns to 11:83 / 173 (42.2%), covers 98.6% of PF03729, 45.2 bits

LBA0860 hypothetical protein from Lactobacillus acidophilus NCFM
2 alignments in 366:535 / 537 (23.6%), covering up to 98.6% of PF03729, 38.5 bits

Or search for genetic data about PF03729 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory