PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04074 (DUF386)

PF04074 hits 27 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SO4189, SO_4189 conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1
Aligns to 1:152 / 153 (99.3%), covers 100.0% of PF04074, 161.0 bits

BT_0770 conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Aligns to 1:147 / 148 (99.3%), covers 100.0% of PF04074, 160.7 bits

YjgK / b4252 DUF386 domain-containing toxin-antitoxin biofilm protein TabA from Escherichia coli K-12 substr. MG1655 (see 3 papers)
TABA_ECOLI / P0AF96 Toxin-antitoxin biofilm protein TabA from Escherichia coli (strain K12) (see paper)
b4252 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
S4500 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
Aligns to 1:148 / 150 (98.7%), covers 99.3% of PF04074, 152.1 bits

B2G73_RS15490 YhcH/YjgK/YiaL family protein from Citrobacter werkmanii
Aligns to 1:148 / 150 (98.7%), covers 99.3% of PF04074, 148.9 bits

STY4806 conserved hypothetical protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 1:148 / 150 (98.7%), covers 99.3% of PF04074, 148.5 bits

SEET0819_06210 YhcH/YjgK/YiaL family protein from Salmonella enterica subsp. enterica serovar Tennessee str.
Aligns to 1:148 / 150 (98.7%), covers 99.3% of PF04074, 147.2 bits

SENTW_3768 YhcH/YjgK/YiaL family protein from Salmonella enterica subsp. enterica serovar Weltevreden str.
Aligns to 1:150 / 154 (97.4%), covers 100.0% of PF04074, 146.2 bits

NANQ_HAEIN / P44583 N-acetylneuraminate anomerase; N-acetylneuraminate openase from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 2 papers)
1s4cB / P44583 Yhch protein (hi0227) copper complex (see paper)
HI0227 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 1:151 / 155 (97.4%), covers 100.0% of PF04074, 144.5 bits

STY4129 conserved hypothetical protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 1:150 / 154 (97.4%), covers 100.0% of PF04074, 144.2 bits

PBPRA2282 conserved hypothetical protein (NCBI) from Photobacterium profundum SS9
Aligns to 1:159 / 163 (97.5%), covers 100.0% of PF04074, 142.3 bits

YiaL / b3576 DUF386 domain-containing protein YiaL from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b3576 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:150 / 155 (96.8%), covers 100.0% of PF04074, 141.0 bits

S3474 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
Aligns to 1:149 / 154 (96.8%), covers 100.0% of PF04074, 140.6 bits

YhcH / b3221 DUF386 domain-containing protein YhcH from Escherichia coli K-12 substr. MG1655 (see 5 papers)
NANQ_ECOLI / P45424 N-acetylneuraminate anomerase NanQ; N-acetylneuraminate openase from Escherichia coli (strain K12) (see 2 papers)
nanQ / P45424 N-acetylneuraminate anomerase (EC 5.1.3.24) from Escherichia coli (strain K12) (see 3 papers)
yhcH / RF|NP_417688 uncharacterized protein yhcH from Escherichia coli K12 (see paper)
b3221 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:149 / 154 (96.8%), covers 100.0% of PF04074, 139.4 bits

SpnNT_01747 YhcH/YjgK/YiaL family protein from Streptococcus pneumoniae
spr1535 Hypothetical protein (NCBI ptt file) from Streptococcus pneumoniae R6
SPD_1503 hypothetical protein (NCBI) from Streptococcus pneumoniae D39
Aligns to 1:148 / 150 (98.7%), covers 100.0% of PF04074, 139.4 bits

c3975 Hypothetical protein yhcH (NCBI ptt file) from Escherichia coli CFT073
Aligns to 1:149 / 154 (96.8%), covers 100.0% of PF04074, 139.3 bits

SP_1680 hypothetical protein (RefSeq) from Streptococcus pneumoniae TIGR4
Aligns to 1:148 / 150 (98.7%), covers 99.3% of PF04074, 129.8 bits

SPD_1492 hypothetical protein (NCBI) from Streptococcus pneumoniae D39
Aligns to 1:148 / 150 (98.7%), covers 99.3% of PF04074, 128.7 bits

ESA_03609 hypothetical protein (RefSeq) from Enterobacter sakazakii ATCC BAA-894
ESA_03609 N-acetylneuraminate anomerase from Cronobacter sakazakii ATCC BAA-894
Aligns to 1:148 / 154 (96.1%), covers 99.3% of PF04074, 118.5 bits

gbs0036 Unknown (NCBI ptt file) from Streptococcus agalactiae NEM316
SAG0037 conserved hypothetical protein (NCBI ptt file) from Streptococcus agalactiae 2603V/R
Aligns to 1:145 / 147 (98.6%), covers 99.3% of PF04074, 115.7 bits

RUMGNA_02700 hypothetical protein (RefSeq) from Ruminococcus gnavus ATCC 29149
RUMGNA_02700 YhcH/YjgK/YiaL family protein from [Ruminococcus] gnavus ATCC 29149
Aligns to 1:148 / 149 (99.3%), covers 100.0% of PF04074, 115.4 bits

BN865_07130 YhcH/YjgK/YiaL family protein from Campylobacter coli 76339
Aligns to 1:161 / 162 (99.4%), covers 98.6% of PF04074, 100.0 bits

c0758 Hypthetical protein (NCBI ptt file) from Escherichia coli CFT073
Aligns to 1:150 / 156 (96.2%), covers 100.0% of PF04074, 97.1 bits

VP2404 evolved beta-D-galactosidase, beta subunit; cryptic gene (NCBI ptt file) from Vibrio parahaemolyticus RIMD 2210633
Aligns to 1:141 / 150 (94.0%), covers 99.3% of PF04074, 90.8 bits

EbgC / b3077 DUF386 domain-containing evolved β-D-galactosidase subunit β from Escherichia coli K-12 substr. MG1655 (see paper)
EBGC_ECOLI / P0AC73 Evolved beta-galactosidase subunit beta from Escherichia coli (strain K12) (see paper)
b3077 cryptic beta-D-galactosidase, beta subunit (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:140 / 149 (94.0%), covers 99.3% of PF04074, 87.4 bits

HP1029 hypothetical protein (NCBI ptt file) from Helicobacter pylori 26695
O25673 Flagellar motor switch protein from Helicobacter pylori (strain ATCC 700392 / 26695)
Aligns to 1:170 / 178 (95.5%), covers 89.2% of PF04074, 73.5 bits

4tsdB / O25673 Crystal structure of helicobacter pylori hp1029 (see paper)
Aligns to 1:169 / 181 (93.4%), covers 86.5% of PF04074, 73.2 bits

jhp0395 putative (NCBI ptt file) from Helicobacter pylori J99
Aligns to 13:170 / 178 (88.8%), covers 78.4% of PF04074, 70.7 bits

Or search for genetic data about PF04074 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory