PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04175 (DUF406)

PF04175.12 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YPO2745 conserved hypothetical protein (NCBI ptt file) from Yersinia pestis CO92
YPTB2638 hypothetical protein (NCBI) from Yersinia pseudotuberculosis IP 32953
Aligns to 7:98 / 98 (93.9%), covers 98.9% of PF04175, 132.1 bits

ECs3226 hypothetical protein (NCBI) from Escherichia coli O157:H7 str. Sakai
Aligns to 3:94 / 94 (97.9%), covers 100.0% of PF04175, 131.0 bits

YfcZ / b2343 DUF406 domain-containing protein YfcZ from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b2343 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 3:94 / 94 (97.9%), covers 100.0% of PF04175, 130.8 bits

Q7CQ33 Putative cytoplasmic protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
STM2390 putative cytoplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 3:94 / 94 (97.9%), covers 100.0% of PF04175, 127.5 bits

HI0400 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 4:95 / 95 (96.8%), covers 100.0% of PF04175, 122.2 bits

HI0636 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
P44027 UPF0381 protein HI_0636 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Aligns to 5:95 / 96 (94.8%), covers 96.7% of PF04175, 107.2 bits

YiiS / b3922 DUF406 domain-containing protein YiiS from Escherichia coli K-12 substr. MG1655 (see 5 papers)
b3922 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 3:96 / 99 (94.9%), covers 97.8% of PF04175, 101.7 bits

ECs4847 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 3:96 / 99 (94.9%), covers 97.8% of PF04175, 101.5 bits

VPA0419 conserved hypothetical protein (NCBI ptt file) from Vibrio parahaemolyticus RIMD 2210633
Q87J34 Uncharacterized protein from Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Aligns to 6:95 / 99 (90.9%), covers 98.9% of PF04175, 100.5 bits

Or search for genetic data about PF04175 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory