Family Search for PF04217 (DUF412)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF04217 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STM2336 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 11:149 / 151 (92.1%), covers 100.0% of PF04217, 196.8 bits

• Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium
  Yoon, PLoS pathogens 2009
  • “...prediction only 3 2.4 STM1097, STM1676, yqfA Function unknown 7 5.7 yafK , STM0884, STM1632, STM2336, STM2780, STM3516, STM4549 Not in COGs 40 32.5 pefI , bcfD , STM0081, STM0082, STM0306, STM0307, yaiA , STM0972, STM1029, pagD , STM1276, osmE , STM1485, STM1540, pqaA , STM1553,...”

t0528 conserved hypothetical protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 11:149 / 151 (92.1%), covers 100.0% of PF04217, 196.2 bits

• ChIP-seq and transcriptome analysis of the OmpR regulon of Salmonella enterica serovars Typhi and Typhimurium reveals accessory genes implicated in host colonization
  Perkins, Molecular microbiology 2013
  • “...second motif AYGGCCTA was present in single copy in the upstream region of four loci: t0528, t1320, dppA and tviA . There was also a significant difference in the magnitude of ChIP sequence peaks containing motif AYGGCCTA compared with those with no identifiable motif (Student's t...”

YfbV / b2295 UPF0208 membrane protein YfbV from Escherichia coli K-12 substr. MG1655 (see 4 papers)
yfbV / RF|NP_416798 UPF0208 membrane protein yfbV from Escherichia coli K12 (see paper)
b2295 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 11:149 / 151 (92.1%), covers 100.0% of PF04217, 192.1 bits

• Subminimal inhibitory concentrations of the disinfectant benzalkonium chloride select for a tolerant subpopulation of Escherichia coli with inheritable characteristics
  Moen, International journal of molecular sciences 2012
  • “...a 100% identity to a hypothetical protein in Shigella flexneri (BLAST). b2107 1.0 Function unknown b2295 0.5 Function unknown yaiL 0.8 Function unknown ybjX 0.6 Gene ybjX has no known function but has 99% protein homology to a putative enzyme in Shigella flexneri 2a and 55%...”

Or search for genetic data about PF04217 in the Fitness Browser