PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04219 (DUF413)

PF04219.12 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

DDA3937_RS20185 DUF413 domain-containing protein from Dickeya dadantii 3937
Aligns to 10:99 / 112 (80.4%), covers 98.9% of PF04219, 136.0 bits

YPO3903 conserved hypothetical protein (NCBI ptt file) from Yersinia pestis CO92
Aligns to 10:99 / 112 (80.4%), covers 98.9% of PF04219, 132.9 bits

t3448 conserved hypothetical protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi Ty2
STY3707 conserved hypothetical protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi str. CT18
SC3805 putative LysR type transcriptional regulator with pssR (NCBI) from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
STM14_4694 macrodomain Ori organization protein MaoP from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Aligns to 10:99 / 112 (80.4%), covers 98.9% of PF04219, 132.3 bits

MaoP / b3764 macrodomain Ori protein from Escherichia coli K-12 substr. MG1655 (see 5 papers)
b3764 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
NP_418213 macrodomain Ori protein from Escherichia coli str. K-12 substr. MG1655
P0ADN2 UPF0438 protein YifE from Escherichia coli (strain K12)
EC958_4230 macrodomain Ori organization protein MaoP from Escherichia coli O25b:H4-ST131
Aligns to 10:99 / 112 (80.4%), covers 98.9% of PF04219, 132.0 bits

PMI3296 hypothetical protein (RefSeq) from Proteus mirabilis HI4320
Aligns to 10:99 / 112 (80.4%), covers 98.9% of PF04219, 128.6 bits

HI0847 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 10:99 / 111 (81.1%), covers 96.7% of PF04219, 127.2 bits

VPA0040 conserved hypothetical protein (NCBI ptt file) from Vibrio parahaemolyticus RIMD 2210633
Aligns to 12:101 / 117 (76.9%), covers 98.9% of PF04219, 123.3 bits

VCA1021 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 12:101 / 119 (75.6%), covers 98.9% of PF04219, 122.2 bits

Or search for genetic data about PF04219 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory