PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04235 (DUF418)

PF04235.12 hits 12 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

ECs3044 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 215:375 / 385 (41.8%), covers 99.4% of PF04235, 161.2 bits

YeiB / b2152 DUF418 domain-containing protein YeiB from Escherichia coli K-12 substr. MG1655
b2152 conserved inner membrane protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 215:375 / 385 (41.8%), covers 99.4% of PF04235, 160.6 bits

y2663 hypothetical protein (NCBI ptt file) from Yersinia pestis KIM
Aligns to 219:379 / 391 (41.2%), covers 98.8% of PF04235, 157.9 bits

SC2208 putative inner membrane protein (NCBI) from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 215:375 / 380 (42.4%), covers 99.4% of PF04235, 152.7 bits

XF0651 transport protein (NCBI ptt file) from Xylella fastidiosa 9a5c
Aligns to 261:419 / 430 (37.0%), covers 98.8% of PF04235, 144.6 bits

BA_2111 hypothetical protein predicted by GeneMark (NCBI) from Bacillus anthracis str. A2012
BA1593 membrane protein, putative (NCBI ptt file) from Bacillus anthracis str. Ames
BAS1477 membrane protein, putative (NCBI) from Bacillus anthracis str. Sterne
Aligns to 217:376 / 387 (41.3%), covers 100.0% of PF04235, 135.7 bits

BTHUR0008_RS07395 DUF418 domain-containing protein from Bacillus thuringiensis serovar berliner ATCC 10792
Aligns to 217:376 / 387 (41.3%), covers 100.0% of PF04235, 131.8 bits

SO_1396 conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1
Aligns to 233:386 / 399 (38.6%), covers 99.4% of PF04235, 120.1 bits

BACI_c51040 DUF418 domain-containing protein from Bacillus cereus biovar anthracis str. CI
Aligns to 189:340 / 347 (43.8%), covers 99.4% of PF04235, 108.4 bits

BMB171_C4385 DUF418 domain-containing protein from Bacillus thuringiensis BMB171
Aligns to 164:334 / 340 (50.3%), covers 98.8% of PF04235, 107.3 bits

BC4744 hypothetical Membrane Spanning Protein (NCBI ptt file) from Bacillus cereus ATCC 14579
Aligns to 164:334 / 340 (50.3%), covers 98.8% of PF04235, 105.9 bits

cg2095 hypothetical protein (RefSeq) from Corynebacterium glutamicum ATCC 13032
Aligns to 260:430 / 468 (36.5%), covers 100.0% of PF04235, 68.4 bits

Or search for genetic data about PF04235 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory