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Family Search for PF04239 (DUF421)

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Running HMMer for PF04239

PF04239 hits 16 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

O31533 UPF0702 transmembrane protein YetF from Bacillus subtilis (strain 168)
NP_388595 hypothetical protein from Bacillus subtilis subsp. subtilis str. 168
BSU07140 hypothetical protein from Bacillus subtilis subsp. subtilis str. 168
Aligns to 81:215 / 231 (58.4%), covers 98.5% of PF04239, 156.8 bits

Q812J9 Hypothetical Membrane Associated Protein from Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Aligns to 84:217 / 289 (46.4%), covers 100.0% of PF04239, 150.3 bits

Q813Q8 Hypothetical Membrane Associated Protein from Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Aligns to 81:216 / 228 (59.6%), covers 99.3% of PF04239, 145.6 bits

CPR_1348 hypothetical protein from Clostridium perfringens SM101
Aligns to 78:212 / 232 (58.2%), covers 98.5% of PF04239, 143.0 bits

BAS4309 conserved hypothetical protein from Bacillus anthracis str. Sterne
Aligns to 80:204 / 215 (58.1%), covers 99.3% of PF04239, 137.5 bits

Q187A0 Membrane protein from Clostridioides difficile (strain 630)
CD1789 hypothetical protein from Clostridium difficile 630
Aligns to 78:206 / 219 (58.9%), covers 99.3% of PF04239, 137.4 bits

SM12261_0438 DUF421 domain-containing protein from Streptococcus mitis NCTC 12261
Aligns to 82:201 / 211 (56.9%), covers 99.3% of PF04239, 131.8 bits

LACR_2411 Predicted membrane protein from Lactococcus lactis subsp. cremoris SK11
Aligns to 81:200 / 211 (56.9%), covers 98.5% of PF04239, 128.3 bits

Ddes_1374 protein of unknown function DUF421 from Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Aligns to 89:208 / 248 (48.4%), covers 97.0% of PF04239, 108.3 bits

EC958_1062 DUF421 domain-containing protein from Escherichia coli O25b:H4-ST131
c1044 Hypothetical protein ycaP from Escherichia coli CFT073
Aligns to 96:186 / 230 (39.6%), covers 53.3% of PF04239, 62.3 bits

YcaP / b0906 DUF421 domain-containing protein YcaP from Escherichia coli K-12 substr. MG1655
b0906 conserved inner membrane protein from Escherichia coli str. K-12 substr. MG1655
P75839 UPF0702 transmembrane protein YcaP from Escherichia coli (strain K12)
Aligns to 96:186 / 230 (39.6%), covers 53.3% of PF04239, 62.3 bits

ECs0989 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 96:187 / 230 (40.0%), covers 51.9% of PF04239, 62.1 bits

KP1_2896 hypothetical protein from Klebsiella pneumoniae NTUH-K2044
Aligns to 77:148 / 148 (48.6%), covers 51.9% of PF04239, 57.0 bits

MSMEG_1844 hypothetical protein from Mycobacterium smegmatis str. MC2 155
Aligns to 95:170 / 174 (43.7%), covers 50.4% of PF04239, 51.1 bits

MSMEG_4414 hypothetical protein from Mycobacterium smegmatis str. MC2 155
Aligns to 93:174 / 179 (45.8%), covers 51.9% of PF04239, 43.7 bits

BPSS2213 putative membrane protein from Burkholderia pseudomallei K96243
Aligns to 96:167 / 167 (43.1%), covers 51.1% of PF04239, 38.8 bits

Or search for genetic data about PF04239 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory