PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04241 (DUF423)

PF04241.15 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SA0540 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus N315
Aligns to 18:103 / 122 (70.5%), covers 100.0% of PF04241, 109.2 bits

WP_042478071 DUF423 domain-containing protein from Bacillus ndiopicus
Aligns to 18:108 / 123 (74.0%), covers 100.0% of PF04241, 104.8 bits

lmo0666 similar to unknown protein (NCBI ptt file) from Listeria monocytogenes EGD-e
LMRG_00353 hypothetical protein (RefSeq) from Listeria monocytogenes 10403S
Aligns to 18:103 / 125 (68.8%), covers 100.0% of PF04241, 103.6 bits

HI1073 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 19:104 / 124 (69.4%), covers 100.0% of PF04241, 91.3 bits

YgdD / b2807 DUF423 domain-containing inner membrane protein YgdD from Escherichia coli K-12 substr. MG1655 (see 4 papers)
YGDD_ECOLI / P0ADR2 UPF0382 inner membrane protein YgdD from Escherichia coli (strain K12) (see paper)
Aligns to 20:106 / 131 (66.4%), covers 100.0% of PF04241, 82.5 bits

YLKC_SCHPO / Q9P7G8 UPF0382 membrane protein C1782.12c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
Aligns to 17:106 / 118 (76.3%), covers 100.0% of PF04241, 80.2 bits

AT2G04900 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 37:116 / 128 (62.5%), covers 100.0% of PF04241, 73.5 bits

Q8N2U0 Transmembrane protein 256 from Homo sapiens
NP_689979 transmembrane protein 256 precursor from Homo sapiens
Aligns to 22:101 / 113 (70.8%), covers 98.9% of PF04241, 63.3 bits

Or search for genetic data about PF04241 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory