Family Search for PF04284 (DUF441)

PF04284 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

BSNT_09337 DUF441 family protein from Bacillus subtilis subsp. natto BEST195
Aligns to 7:146 / 154 (90.9%), covers 100.0% of PF04284, 165.4 bits

• Whole-Genome Sequencing and Comparative Genome Analysis of Bacillus subtilis Strains Isolated from Non-Salted Fermented Soybean Foods
  Kamada, PloS one 2015
  • “...all are annotated as genes encoding hypothetical proteins and their function is not identified yet, BSNT_09337 and BSNT_09100, which are located near these genes, are annotated with GO terms related to membrane and DNA binding, respectively. Genes BSNT_08913, BSNT_06665, and BSNT_08139 highly contributed to the second...”

Q71Z99 UPF0756 membrane protein LMOf2365_1590 from Listeria monocytogenes serotype 4b (strain F2365)
Aligns to 7:146 / 153 (91.5%), covers 100.0% of PF04284, 161.9 bits

• Proteomic Exploration of Listeria monocytogenes for the Purpose of Vaccine Designing Using a Reverse Vaccinology Approach
  Srivastava, International journal of peptide research and therapeutics 2021
  • “...0.743 Non-allergen 156 Q720B5 0.934 Non-allergen 157 Q71XA1 1.344 Non-allergen 158 A6X137 0.435 Non-allergen 159 Q71Z99 0.409 Non-allergen 160 Q71YM0 1.017 Non-allergen 161 Q724P3 0.613 Non-allergen 162 Q71XW0 0.917 Non-allergen 163 Q720B7 0.621 Non-allergen 164 Q721A0 0.643 Non-allergen 165 Q71ZL4 0.912 Non-allergen `166 Q721A5 0.545 Non-allergen...”
  • “...125.7 2.0765 Antigen Q71XA1 DRB1_0701 ITISLGFYL 56.9 1.6467 Antigen A6X137 DRB1_1301 AHAKIRERL 32.2 1.2949 Antigen Q71Z99 DRB1_0701 PQVTVSLVF 92.9 1.1655 Antigen DRB1_1301 VILLKLFHV 49.4 1.5441 Antigen Q724P3 DRB1_1301 IRCKYTKTR 22.7 2.0203 Antigen DRB1_1301 RCKYTKTRR 43 1.5601 Antigen Q71ZL4 DRB1_1301 LMLDIRYRH 33.2 1.656 Antigen DRB1_1301 SLMLDIRYR 35.4...”

lmo1568 similar to unknown proteins from Listeria monocytogenes EGD-e
LMRG_01399 hypothetical protein from Listeria monocytogenes 10403S
Aligns to 7:146 / 153 (91.5%), covers 100.0% of PF04284, 161.3 bits

• Transcriptome Sequencing of Listeria monocytogenes Reveals Major Gene Expression Changes in Response to Lactic Acid Stress Exposure but a Less Pronounced Response to Oxidative Stress
  Cortes, Frontiers in microbiology 2019
  • “...of an operon ( Mittal et al., 2009 ) along with the upstream gene (a lmo1568 homolog), which was upregulated as well. However, the relevance of these three citric acid cycle genes to stress response is currently unknown. In 6179, the DE gene with the highest...”
• Listeria monocytogenes σ^A Is Sufficient to Survive Gallbladder Bile Exposure
  Boonmee, Frontiers in microbiology 2019
  • “...protein 60 family co-chaperone GroES 2.58 0.00 LMRG_01286 lmo1681 LMRG_01286-LMRG_01288 5-methyltetrahydropteroyltriglutamatehomocysteine methyltransferase 2.03 0.03 LMRG_01399 lmo1568 LMRG_01399-LMRG_01401 Membrane protein 2.46 0.00 LMRG_01585 lmo2247 LMRG_01585-LMRG_01587 Xidoreductase of aldo/keto reductase family, subgroup 2, glyoxal reductase 2.09 0.01 LMRG_01842 lmo2406 Hypothetical protein 2.38 0.00 LMRG_02144 lmo2600 LMRG_02142-LMRG_02144 ATPase component...”
• CcpC-dependent regulation of citrate synthase gene expression in Listeria monocytogenes
  Mittal, Journal of bacteriology 2009
  • “...a complex operon with the upstream genes lmo1569 and lmo1568. The downstream isocitrate dehydrogenase (citC) gene appears to be part of the same operon as well....”
  • “...lmo1569 and a proximal promoter located upstream of the lmo1568 gene. Transcription of citZ from both promoters was regulated by CcpC by interaction with a...”
• CcpC-dependent regulation of citB and lmo0847 in Listeria monocytogenes
  Kim, Journal of bacteriology 2006
  • “...polC (DNA polymerase subunit), fur (iron metabolism regulator), lmo1568 (a gene just upstream of the Krebs cycle genes citZ and citC), citBLm (aconitase), and...”
  • “...subtilis, since the gene immediately upstream of citZ (lmo1568) has an apparent CcpC binding site in its putative promoter region. No apparent transcription...”
• Listeria monocytogenes σ^A Is Sufficient to Survive Gallbladder Bile Exposure
  Boonmee, Frontiers in microbiology 2019
  • “...shock protein 60 family co-chaperone GroES 2.58 0.00 LMRG_01286 lmo1681 LMRG_01286-LMRG_01288 5-methyltetrahydropteroyltriglutamatehomocysteine methyltransferase 2.03 0.03 LMRG_01399 lmo1568 LMRG_01399-LMRG_01401 Membrane protein 2.46 0.00 LMRG_01585 lmo2247 LMRG_01585-LMRG_01587 Xidoreductase of aldo/keto reductase family, subgroup 2, glyoxal reductase 2.09 0.01 LMRG_01842 lmo2406 Hypothetical protein 2.38 0.00 LMRG_02144 lmo2600 LMRG_02142-LMRG_02144 ATPase...”

t1160 putative membrane protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 7:145 / 148 (93.9%), covers 100.0% of PF04284, 154.2 bits

• Subject Index
  , Molecular biology of the cell 1994

YeaL / b1789 DUF441 domain-containing inner membrane protein YeaL from Escherichia coli K-12 substr. MG1655
b1789 conserved inner membrane protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 7:145 / 148 (93.9%), covers 100.0% of PF04284, 153.3 bits

• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013

B3WE66 UPF0756 membrane protein LCABL_15860 from Lacticaseibacillus casei (strain BL23)
Aligns to 5:144 / 153 (91.5%), covers 100.0% of PF04284, 151.6 bits

• The Manifold Bioactivity and Immunoreactivity of Microbial Proteins of Cow and Human Mature Milk in Late Lactation.
  Ogrodowczyk, Animals : an open access journal from MDPI 2022
  • “...delbrueckii 60 kDa chaperonin A0A0E3CQW5 46 57,357 3 0.16 3 Lactobacillus rhamnosus UPF0756 membrane protein B3WE66 45 15,858 2 0.69 10 Lactobacillus casei 30S ribosomal protein S1 Q1GAK0 44 44,211 3 0.21 5 Lactobacillus delbrueckii Lipoprotein K0MV23 44 30,417 2 0.15 2 Lactobacillus casei a UniProt/Trembl...”
  • “...212/1.73 IgG-1.237; IgE-0.972; IgA-1.184 0.78 0.0074 0.0423 0.0167 0.0018 - 0.0037 0.0037 UPF0756 membrane protein B3WE66 44.0% identity with allergen Bla g 1; E = 0.13 108/1.45 IgA-1.048 1.48 0.0327 - - - 0.0196 - 30S ribosomal protein S1 Q1GAK0 no matches; score:0.77 to putative allergenes...”

HI1074 conserved hypothetical protein from Haemophilus influenzae Rd KW20
Aligns to 10:147 / 150 (92.0%), covers 100.0% of PF04284, 146.7 bits

• Antibiotic Susceptibility and Molecular Typing of Invasive Haemophilus influenzae Isolates, with Emergence of Ciprofloxacin Resistance, 2017-2021, Italy
  Giufrè, Microorganisms 2023
  • “...* Hi1061 2 1.5 834 390 23 IIb * * * * * * * Hi1074 3 3 14 3 1 IIb * * * * Hi1086 1.5 4 949 17 IIb * * * * Hi1108 2 4 919 48 IIb * * Hi1109 1.5...”

NTHI1233 conserved putative membrane protein from Haemophilus influenzae 86-028NP
R2866_RS06645 DUF441 domain-containing protein from Haemophilus influenzae R2866
Aligns to 10:147 / 150 (92.0%), covers 100.0% of PF04284, 146.6 bits

• Phosphocholine-Modified Lipooligosaccharides of Haemophilus influenzae Inhibit ATP-Induced IL-1β Release by Pulmonary Epithelial Cells
  Richter, Molecules (Basel, Switzerland) 2018
  • “...In contrast, PC-free LOS from the corresponding mutant strains lacking the PC-modification, RM7004- lic1 and NTHi1233- lic1 [ 4 ], was ineffective ( Figure 3 A,B). We selected A549 cells to test the hypothesis that PC-LOS signals via the same nAChR subunits like free PC. The...”
  • “...min. PC-free LOS from the corresponding lic1 -mutant strains RM7004- lic1 (RM; 1 g/mL) and NTHi1233- lic1 (NTHi; 1 g/mL) lacking the PC-modification were included as a negative control. ( C ) The inhibitory effects of RMPC and NTHiPC were reversed by nicotinic antagonists mecamylamine (Mec;...”
• The modA10 phasevarion of nontypeable Haemophilus influenzae R2866 regulates multiple virulence-associated traits
  VanWagoner, Microbial pathogenesis 2016
  • “...the genes with increased transcription in the modA10 mutant two, R2866_RS04685 ( ompA ) and R2866_RS06645 ( yeaL ) are both highly conserved membrane proteins. Gene R2866_RS04675 which has a helix-turn-helix structure, is annotated as hipB (high persister B) a member of the genes in the...”
  • “...R2866 modA10 ::kan ompA -like R2866_RS04685 3.32 0.0067 5.68 olpA2 R2866_RS04680 2.69 0.0021 6.43 yeaL R2866_RS06645 1.5 0.040 2.34 hipB R2866_RS04675 1.44 0.0095 1.86 Decreased expression in R2866 modA10 ::kan yjjB R2866_RS02455 1.45 0.030 1.62 ccmB R2866_RS06560 1.52 0.0049 1.74 nrfA R2866_RS06675 1.53 0.036 2.08 moaA...”

Q8ZPW7 UPF0756 membrane protein YeaL from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
STM1280 putative inner membrane protein from Salmonella typhimurium LT2
Aligns to 7:133 / 134 (94.8%), covers 89.2% of PF04284, 131.7 bits

• Comparison of Phenotype and Genotype Virulence and Antimicrobial Factors of Salmonella Typhimurium Isolated from Human Milk
  Pławińska-Czarnak, International journal of molecular sciences 2023
  • “...in the loss of a large part of the protein (UPF0756 membrane protein YeaL UniProtKB/Swiss-Prot: Q8ZPW7 [ 36 ]). More specifically, the YeaL protein contains 148 aa in the reference strain (NP_460246.2), but only 134 aa in S . Typhimurium 69M: gtg cgg Val, Arg (VR),...”
• Comparison of Phenotype and Genotype Virulence and Antimicrobial Factors of Salmonella Typhimurium Isolated from Human Milk
  Pławińska-Czarnak, International journal of molecular sciences 2023
  • “...Gene Name Function snpEff Type snpEff Impact 1357016 CGC CGGC Insertion gtgcgg gtGCCGg 390_391insC Val130_Arg131fs STM1280 yeaL UPF0756 membrane protein YeaL Frameshift variant HIGH 1543816 GGC GCGC Insertion ggcgct GCGCgct 1631_1632insC Gly544_Ala545fs STM1468 fumA Fumarate hydratase class I, aerobic (EC 4.2.1.2) Frameshift variant HIGH 1794104 A...”
• Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes
  Soyer, BMC evolutionary biology 2009
  • “...Conserved hypothetical protein 1386 Ty# (0.0884) - STM1532 - Hypothetical protein 678 Ty# (0.1614) - STM1280 - Conserved hypothetical protein 396 Tym# (0.0145) - STM3463 - Conserved hypothetical protein 201 Tym# (0.1005) - Genes in JCVI role category "Purines, pyrimidines, nucleosides, and nucleotides" STM0534 purE Phosphoribosylaminoimidazole...”

Or search for genetic data about PF04284 in the Fitness Browser