PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04287 (DUF446)

PF04287.12 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SO_1619 conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1
Aligns to 6:102 / 107 (90.7%), covers 96.9% of PF04287, 117.0 bits

Z4108 orf, hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 EDL933
Aligns to 6:103 / 109 (89.9%), covers 99.0% of PF04287, 115.8 bits

YqcC / b2792 DUF446 domain-containing protein YqcC from Escherichia coli K-12 substr. MG1655 (see 4 papers)
b2792 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 6:103 / 109 (89.9%), covers 99.0% of PF04287, 115.8 bits

EAM_2712 hypothetical protein (RefSeq) from Erwinia amylovora ATCC 49946
Aligns to 6:103 / 107 (91.6%), covers 100.0% of PF04287, 114.2 bits

Q57152 Uncharacterized protein HI_1436 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
HI1436 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 4:100 / 106 (91.5%), covers 99.0% of PF04287, 113.9 bits

VSAL_I0712 hypothetical protein (RefSeq) from Vibrio salmonicida LFI1238
VSAL_I0712 YqcC family protein from Aliivibrio salmonicida LFI1238
Aligns to 6:102 / 106 (91.5%), covers 98.0% of PF04287, 111.4 bits

SF5M90T_2595 YqcC family protein from Shigella flexneri 5a str. M90T
Aligns to 6:103 / 109 (89.9%), covers 99.0% of PF04287, 110.2 bits

Or search for genetic data about PF04287 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory