PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04304 (DUF454)

PF04304.13 hits 18 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

BUE60_21160 YbaN family protein from Pseudomonas syringae pv. actinidiae
Aligns to 15:129 / 134 (85.8%), covers 100.0% of PF04304, 139.9 bits

YbaN / b0468 DUF454 domain-containing inner membrane protein YbaN from Escherichia coli K-12 substr. MG1655 (see 2 papers)
SF5M90T_438 DUF454 family protein from Shigella flexneri 5a str. M90T
b0468 conserved inner membrane protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Z0585 putative gene 58 (NCBI ptt file) from Escherichia coli O157:H7 EDL933
Aligns to 3:117 / 125 (92.0%), covers 99.1% of PF04304, 139.5 bits

DIP2356 Putative conserved membrane protein (NCBI) from Corynebacterium diphtheriae NCTC 13129
Aligns to 3:120 / 125 (94.4%), covers 99.1% of PF04304, 138.0 bits

SEET0819_09365 DUF454 family protein from Salmonella enterica subsp. enterica serovar Tennessee str.
Aligns to 3:117 / 125 (92.0%), covers 99.1% of PF04304, 137.8 bits

BN5_1641 YbaN family protein from Pseudomonas pseudoalcaligenes CECT 5344
Aligns to 14:128 / 132 (87.1%), covers 100.0% of PF04304, 137.3 bits

HD1939 conserved hypothetical protein (NCBI) from Haemophilus ducreyi 35000HP
Aligns to 2:117 / 130 (89.2%), covers 99.1% of PF04304, 134.5 bits

APL_1806 hypothetical protein (NCBI) from Actinobacillus pleuropneumoniae L20
Aligns to 2:117 / 129 (89.9%), covers 98.3% of PF04304, 133.4 bits

VC1052 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 7:121 / 132 (87.1%), covers 100.0% of PF04304, 130.2 bits

BQ00830 hypothetical protein (NCBI) from Bartonella quintana str. Toulouse
Aligns to 12:127 / 128 (90.6%), covers 99.1% of PF04304, 128.6 bits

NWMN_0112 hypothetical protein (RefSeq) from Staphylococcus aureus subsp. aureus str. Newman
SA0161 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus N315
SAOUHSC_00131 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus NCTC 8325
Aligns to 2:117 / 127 (91.3%), covers 97.4% of PF04304, 126.8 bits

SMb20557 CONSERVED HYPOTHETICAL PROTEIN (NCBI ptt file) from Sinorhizobium meliloti 1021
Aligns to 1:106 / 111 (95.5%), covers 89.6% of PF04304, 125.9 bits

SPO0005 YbaN family protein from Ruegeria pomeroyi DSS-3
SPO0005 hypothetical protein (NCBI) from Silicibacter pomeroyi DSS-3
Aligns to 2:116 / 117 (98.3%), covers 98.3% of PF04304, 125.7 bits

SMLT_RS19415 YbaN family protein from Stenotrophomonas maltophilia K279a
Aligns to 22:136 / 141 (81.6%), covers 99.1% of PF04304, 122.8 bits

ACICU_RS04605 YbaN family protein from Acinetobacter baumannii ACICU
ACICU_00880 hypothetical protein (RefSeq) from Acinetobacter baumannii ACICU
Aligns to 33:146 / 146 (78.1%), covers 97.4% of PF04304, 122.3 bits

ABLAC_16850 YbaN family protein from Acinetobacter baumannii LAC-4
Aligns to 33:146 / 146 (78.1%), covers 97.4% of PF04304, 122.3 bits

SH1866 hypothetical protein (NCBI) from Staphylococcus haemolyticus JCSC1435
Aligns to 2:117 / 128 (90.6%), covers 97.4% of PF04304, 110.1 bits

Dshi_1454 hypothetical protein (RefSeq) from Dinoroseobacter shibae DFL 12
Aligns to 13:127 / 165 (69.7%), covers 99.1% of PF04304, 109.5 bits

EF2922 conserved hypothetical protein (NCBI ptt file) from Enterococcus faecalis V583
Aligns to 3:119 / 128 (91.4%), covers 96.5% of PF04304, 97.0 bits

Or search for genetic data about PF04304 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory