PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04317 (DUF463)

PF04317.12 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

NJ56_RS14745 YcjX family protein from Yersinia ruckeri
Aligns to 20:464 / 465 (95.7%), covers 100.0% of PF04317, 625.9 bits

VF_A0314 hypothetical protein (RefSeq) from Vibrio fischeri ES114
Aligns to 20:464 / 465 (95.7%), covers 100.0% of PF04317, 618.1 bits

plu2582 No description from Photorhabdus luminescens subsp. laumondii TTO1
Aligns to 20:464 / 465 (95.7%), covers 99.8% of PF04317, 618.0 bits

STM1685 putative ATPase (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 22:466 / 467 (95.3%), covers 100.0% of PF04317, 610.7 bits

SG1431 putative ATP-binding protein (RefSeq) from Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
Aligns to 22:466 / 467 (95.3%), covers 100.0% of PF04317, 607.0 bits

YcjX / b1321 DUF463 domain-containing protein YcjX from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b1321 conserved protein with nucleoside triphosphate hydrolase domain (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 20:464 / 465 (95.7%), covers 100.0% of PF04317, 605.1 bits

HI1637 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
P44280 Uncharacterized protein HI_1637 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Aligns to 21:469 / 470 (95.5%), covers 100.0% of PF04317, 601.2 bits

SMc00467 CONSERVED HYPOTHETICAL PROTEIN (NCBI ptt file) from Sinorhizobium meliloti 1021
Aligns to 31:498 / 499 (93.8%), covers 100.0% of PF04317, 582.0 bits

SO1810 hypothetical ATPase (NCBI ptt file) from Shewanella oneidensis MR-1
Aligns to 27:484 / 485 (94.4%), covers 100.0% of PF04317, 571.4 bits

RSP_0570 hypothetical protein (NCBI) from Rhodobacter sphaeroides 2.4.1
Aligns to 35:476 / 476 (92.9%), covers 100.0% of PF04317, 548.0 bits

Or search for genetic data about PF04317 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory