Family Search for PF04337 (DUF480)

PF04337 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

ECB94_25375 YceH family protein from Vibrio mediterranei
Aligns to 5:158 / 219 (70.3%), covers 100.0% of PF04337, 213.4 bits

• Genomic and Proteomic Analyses of Extracellular Products Reveal Major Virulence Factors Likely Accounting for Differences in Pathogenicity to Bivalves between Vibrio mediterranei Strains
  Fan, Animals : an open access journal from MDPI 2024
  • “...tkt - Transketolase - A0A3G4VHT5 RW01/DT02 ECB94_24335 - IclR family transcriptional regulator - A0A3G4VJM1 DT02 ECB94_25375 - UPF52 protein ECB94_25375 - A0A3G4VJR7 DT07/RW01 ECB94_23525 - Alpha-amylase - A0A3G4VKZ1 DT07/RW01 ECB94_2372 - Porin nmpC Notes: Gene names correspond to predicted proteins in the proteome; gene ID represents...”

SC1116 putative cytoplasmic protein from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 5:158 / 215 (71.6%), covers 100.0% of PF04337, 211.3 bits

• Use of pulsed field gel electrophoresis and transposon mutagenesis to estimate the minimal number of genes required for motility in Caulobacter crescentus
  Ely, Genetics 1989
  • “...5 8 (flu174), SC1059 (flu-175), SC1066 (flb0179), SC1116 (fla-192), sc1117 (flbN194), Sc1120 (Ju-191), SC1125 (flu-189). SC1131 (flb0196), SC1963 (fla-647), X 2...”

S1151 hypothetical protein from Shigella flexneri 2a str. 2457T
Aligns to 5:158 / 215 (71.6%), covers 100.0% of PF04337, 209.8 bits

• Addendum
  , Open forum infectious diseases 2019

YceH / b1067 DUF480 domain-containing protein YceH from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b1067 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 5:158 / 215 (71.6%), covers 100.0% of PF04337, 209.7 bits

• Identification and mapping of self-assembling protein domains encoded by the Escherichia coli K-12 genome by use of lambda repressor fusions
  Mariño-Ramírez, Journal of bacteriology 2004
  • “...yrbD yrbK ysgA ytfH ytfL b0866 b0897 b0906 b1011 b1067 b1253 b1284 b1299 b1359 b1547 b1606 b1669 b1800 b1853 b1834 b1970 b2007 b2101 b2157 b2160 b2245 b2249...”

A6T7E0 UPF0502 protein KPN78578_10500 from Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Aligns to 5:158 / 217 (71.0%), covers 100.0% of PF04337, 209.5 bits

• Comparative Proteomics of Outer Membrane Vesicles from Polymyxin-Susceptible and Extremely Drug-Resistant Klebsiella pneumoniae
  Hussein, mSphere 2023
  • “...Protein ID Gene Protein Subcellular localisation K. pneumoniae ATCC 700721 A6T5B0 proC Pyrroline-5-carboxylate reductase Cytoplasmic A6T7E0 KPN78578 UPF0502 protein KPN78578_10500 Cytoplasmic A6T7H8 ycfX N-acetyl- d -glucosamine kinase Cytoplasmic A6T7T9 ydjQ Endonuclease in nucleotide excision repair Cytoplasmic A6T7X7 yciL Pseudouridine synthase Cytoplasmic A6T7G4 lpoB Penicillin-binding protein activator...”

PA14_RS07780 DUF480 domain-containing protein from Pseudomonas aeruginosa UCBPP-PA14
PA14_19450 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 14:158 / 221 (65.6%), covers 100.0% of PF04337, 188.5 bits

• Transposition Behavior Revealed by High-Resolution Description of Pseudomonas Aeruginosa Saltovirus Integration Sites
  Vergnaud, Viruses 2018
  • “...1,569,481; 1,569,485 3,988,644; 3,988,648 PA14_RS07340 68,541/26,332 47% 57 + 4 1,682,632; 1,682,636 3,858,411; 3,858,415 between PA14_RS07780 and PA14_RS07785 299/18,473 35% 57 2 5 2,879,877; 2,879,884 2,752,911; 2,752,918 PA14_RS13425 336/4118 35% 57 3 6 2,938,509; 2,938,513 2,705,279; 2,705,283 PA14_RS13610 4732/32,396 48% 56 0 ms214 7 3,079,036; 3,079,040...”
• Polygenic Adaptation and Clonal Interference Enable Sustained Diversity in Experimental Pseudomonas aeruginosa Populations
  Harris, Molecular biology and evolution 2021
  • “...and carriers PA14_06030 PA0461 Fatty acid and phospholipid metabolism PA14_10910 PA4096 Transport of small molecules PA14_19450 PA3453 Hypothetical, unclassified, unknown PA14_23670 PA3127 Antibiotic resistance and susceptibility PA14_29260 PA2696 Transcriptional regulators PA14_31470 PA2557 Fatty acid and phospholipid metabolism PA14_48210 PA1239 Putative enzymes PA14_55380</<PA14_55390 intergenic magD magD Adaptation,...”

PA3453 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 14:158 / 221 (65.6%), covers 100.0% of PF04337, 188.4 bits

• Network analysis for identifying potential anti-virulence targets from whole transcriptome of Pseudomonas aeruginosa and Staphylococcus aureus exposed to certain anti-pathogenic polyherbal formulations
  Ruparel, Drug target insights 2023
  • “...2.33 0.01 79 mtlD Mannitol 2-dehydrogenase 2.32 0.01 80 PA5033 Hypothetical protein 2.32 0.001 81 PA3453 Hypothetical protein 2.32 1.43E-07 82 PA2352 Glycerophosphoryl diester phosphodiesterase 2.3 0.0008 83 PA3534 Oxidoreductase 2.3 1.04E-06 84 PA0962 Starvation-inducible DNA-binding protein 2.28 4.83E-09 85 hcnA Hydrogen cyanide synthase 2.27 0.01...”
• Polygenic Adaptation and Clonal Interference Enable Sustained Diversity in Experimental Pseudomonas aeruginosa Populations
  Harris, Molecular biology and evolution 2021
  • “...carriers PA14_06030 PA0461 Fatty acid and phospholipid metabolism PA14_10910 PA4096 Transport of small molecules PA14_19450 PA3453 Hypothetical, unclassified, unknown PA14_23670 PA3127 Antibiotic resistance and susceptibility PA14_29260 PA2696 Transcriptional regulators PA14_31470 PA2557 Fatty acid and phospholipid metabolism PA14_48210 PA1239 Putative enzymes PA14_55380</<PA14_55390 intergenic magD magD Adaptation, protection...”

PPUBIRD1_3240 DUF480 domain-containing protein from Pseudomonas putida BIRD-1
Aligns to 12:156 / 215 (67.4%), covers 99.3% of PF04337, 187.9 bits

• 2-Aminoethylphosphonate utilization in Pseudomonas putida BIRD-1 is controlled by multiple master regulators
  Murphy, Environmental microbiology 2022
  • “...N upregulated 2.35 PPUBIRD1_3558 NasS Nitratebinding protein, twocomponent regulator NtrBC dependent, Low N upregulated 2.28 PPUBIRD1_3240 Hypothetical protein NtrBC dependent, Low N upregulated 2.28 PPUBIRD1_1577 XdhA Xanthine dehydrogenase NtrBC dependent, Low N upregulated 2.12 PPUBIRD1_0134 Cox3 Cytochrome c oxidase NtrBC dependent, Low N upregulated 2.12 PPUBIRD1_4631...”

XCV4380 tRNA-Gln from Xanthomonas campestris pv. vesicatoria str. 85-10
Aligns to 10:154 / 222 (65.3%), covers 100.0% of PF04337, 185.7 bits

• Identification of new protein-coding genes with a potential role in the virulence of the plant pathogen Xanthomonas euvesicatoria
  Abendroth, BMC genomics 2017
  • “...4490900..4492780 c 627 625 0078964 rho 4539894..4541690 599 420 0053728 guaA 4966625..4967413 266 256 0053999 XCV4380 5042765..5043472 236 222 Erroneously annotated CDS on Xe plasmid 0166278 XCVd0050 56630..57289 220 217 a Number of the corresponding six-frame-database entry c chromosomal position on the minus strand For detailed...”

XOO0245 hypothetical protein from Xanthomonas oryzae pv. oryzae KACC10331
Aligns to 73:216 / 284 (50.7%), covers 100.0% of PF04337, 175.1 bits

• Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper
  Potnis, BMC genomics 2011
  • “...- XOO3517 / Xoo MAFF 311018 XOO2886 - XOO2906 XOO3286 - XOO3319 / Xoo PXO99A XOO0245 - XOO0270 XOO2029 - XOO2060 / Xoc BLS256 XOC2523 - XOC2545 XOC1309 - XOC1370 / Xg / / / Xcc ATCC33913 / / / Xcc 8004 / / / Xca...”

Or search for genetic data about PF04337 in the Fitness Browser