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Family Search for PF04338 (DUF481)

Running HMMer for PF04338

PF04338 hits 21 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

VIBR0546_03992 DUF481 domain-containing protein from Vibrio brasiliensis LMG 20546
Aligns to 39:254 / 254 (85.0%), covers 100.0% of PF04338, 200.7 bits

XC_0650 hypothetical protein from Xanthomonas campestris pv. campestris str. 8004
XCC3510 conserved hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913
Aligns to 46:265 / 266 (82.7%), covers 99.5% of PF04338, 200.7 bits

XAC0623 conserved hypothetical protein from Xanthomonas axonopodis pv. citri str. 306
XAUB_17400 DUF481 domain-containing protein from Xanthomonas citri pv. aurantifolii str. ICPB 11122
Aligns to 46:265 / 266 (82.7%), covers 99.5% of PF04338, 200.6 bits

PP1357 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 167:375 / 375 (55.7%), covers 100.0% of PF04338, 199.4 bits

YdiY / b1722 acid-inducible putative outer membrane protein YdiY from Escherichia coli K-12 substr. MG1655 (see 4 papers)
TC 1.B.75.1.3 / P76206 YdiY OMP of 252 aas from Escherichia coli (strain K12)
b1722 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 47:252 / 252 (81.7%), covers 99.0% of PF04338, 197.6 bits

c2120 YdiY family protein from Escherichia coli CFT073
Aligns to 47:252 / 252 (81.7%), covers 99.0% of PF04338, 197.6 bits

t1207 putative outer membrane protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 47:252 / 252 (81.7%), covers 99.0% of PF04338, 197.3 bits

VF_0300 DUF481 domain-containing protein from Aliivibrio fischeri ES114
Aligns to 16:231 / 231 (93.5%), covers 100.0% of PF04338, 197.3 bits

STM1327 putative salt-induced outer membrane protein from Salmonella typhimurium LT2
Aligns to 47:252 / 252 (81.7%), covers 99.0% of PF04338, 197.1 bits

VF_0300 putative salt-induced outer membrane protein from Vibrio fischeri ES114
Aligns to 118:333 / 333 (64.9%), covers 100.0% of PF04338, 195.4 bits

Z2751 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 47:252 / 252 (81.7%), covers 98.1% of PF04338, 192.9 bits

PAK_04850 DUF481 domain-containing protein from Pseudomonas aeruginosa PAK
PA4390 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 128:335 / 335 (62.1%), covers 100.0% of PF04338, 192.8 bits

ZMO1563 hypothetical protein from Zymomonas mobilis subsp. mobilis ZM4
Aligns to 111:322 / 327 (64.8%), covers 99.5% of PF04338, 190.6 bits

PSPTO_4381 conserved hypothetical protein from Pseudomonas syringae pv. tomato str. DC3000
Aligns to 127:335 / 335 (62.4%), covers 100.0% of PF04338, 188.4 bits

XF1628 hypothetical protein from Xylella fastidiosa 9a5c
Aligns to 63:282 / 283 (77.7%), covers 99.5% of PF04338, 179.9 bits

Pro1529 Homolog of salt-induced outer membrane prototein from Prochlorococcus marinus str. SS120
Aligns to 81:296 / 296 (73.0%), covers 100.0% of PF04338, 122.3 bits

PA14_57070 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
PA4391 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 128:333 / 333 (61.9%), covers 97.6% of PF04338, 119.3 bits

2f1cX / P76045 Crystal structure of the monomeric porin ompg (see paper)
Aligns to 60:178 / 252 (47.2%), covers 49.5% of PF04338, 33.4 bits

2iwvA / P76045 Structure of the monomeric outer membrane porin ompg in the open and closed conformation (see paper)
Aligns to 70:188 / 277 (43.0%), covers 49.5% of PF04338, 33.1 bits

OmpG / b1319 outer membrane porin G from Escherichia coli K-12 substr. MG1655 (see 17 papers)
ompG / P76045 outer membrane porin G from Escherichia coli (strain K12) (see 27 papers)
OMPG_ECOLI / P76045 Outer membrane porin G; Outer membrane protein G from Escherichia coli (strain K12) (see paper)
TC 1.B.21.1.1 / P76045 Non-specific, 14 from Escherichia coli (see 4 papers)
b1319 outer membrane porin from Escherichia coli str. K-12 substr. MG1655
NP_415835 outer membrane porin G from Escherichia coli str. K-12 substr. MG1655
Aligns to 94:212 / 301 (39.5%), covers 49.5% of PF04338, 32.8 bits

PG1685 hypothetical protein from Porphyromonas gingivalis W83
Aligns to 48:260 / 260 (81.9%), covers 73.3% of PF04338, 21.8 bits

Or search for genetic data about PF04338 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory