Family Search for PF04340 (DUF484)
PF04340 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
YigA / b3810 DUF484 domain-containing protein YigA from Escherichia coli K-12 substr. MG1655 (see paper)
b3810 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 10:233 / 235 (95.3%), covers 99.1% of PF04340, 298.9 bits
c4731 Hypothetical protein yigA from Escherichia coli CFT073
Aligns to 10:233 / 235 (95.3%), covers 99.1% of PF04340, 295.3 bits
- ESCRT-III mediates budding across the inner nuclear membrane and regulates its integrity
Arii, Nature communications 2018 - “...Abcam, Cambridge, UK; 1:1000), CHMP4C (ab155668; Abcam; 1:500), lamin B1 (ab16048-100; Abcam; 1:1000) and calnexin (c4731; Sigma; 1:2000); and commercial mouse polyclonal antibodies against CHMP4A (ab67058; Abcam; 1:500). Mouse polyclonal antibodies against UL31(1:500) and rabbit polyclonal antibodies against UL34 (1:2000) were reported previously 61 . Establishment...”
- Herpes Simplex Virus 1 UL34 Protein Regulates the Global Architecture of the Endoplasmic Reticulum in Infected Cells
Maeda, Journal of virology 2017 - “...antibodies to CD98hc (H-300; Santa Cruz Biotechnology), calnexin (c4731; Sigma), and lamin B1 (ab16048-100; Abcam); and commercial goat polyclonal antibody to 1...”
- Role of herpes simplex virus 1 immediate early protein ICP22 in viral nuclear egress
Maruzuru, Journal of virology 2014 - “...Sigma) and rabbit polyclonal antibodies to calnexin (c4731; Sigma), lamin B1 (ab16048-100; Abcam), Flag (DDDDK; MBL), and VP23 (CAC-CT-HSV-UL18; CosmoBio)....”
PA5279 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 7:227 / 233 (94.8%), covers 99.6% of PF04340, 294.7 bits
- The emergence of cefiderocol resistance in Pseudomonas aeruginosa from a heteroresistant isolate during prolonged therapy
Teran, Antimicrobial agents and chemotherapy 2024 (secret) - Colony-morphology screening uncovers a role for the Pseudomonas aeruginosa nitrogen-related phosphotransferase system in biofilm formation
Cabeen, Molecular microbiology 2016 - “...to PA3699 ; hereafter 16550 ), which encodes a TetR-type DNA repressor; PA14_69700 (orthologous to PA5279 ; hereafter 69700 ), which encodes an uncharacterized GAF-domain protein; and ptsP , which encodes enzyme I of the nitrogen-regulated phosphotransferase (PTS Ntr ) system. Insertions in these genes were...”
- “...is distinct from a role in lasR repression. The third newly identified gene, 69700 ( PA5279 in PAO1), is notable because its product inhibits biofilm formation and because it contains a crystallographically validated GAF domain of unknown function (PDB 3E98). GAF domains are generally considered small...”
- Structure of the cytoplasmic region of PelD, a degenerate diguanylate cyclase receptor that regulates exopolysaccharide production in Pseudomonas aeruginosa
Whitney, The Journal of biological chemistry 2012 - “...of a P. aeruginosa GAF domain of unknown function (PA5279; Protein Data Bank code 3E98) solved by the Joint Center for Structural Genomics contains an...”
- “...region. Cartoon representation of P. aeruginosa PelD, P. aeruginosa PA5279, and H. sapiens PDE2A. For each protein, the GAF domain(s) is displayed in blue with...”
- Role of lon, an ATP-dependent protease homolog, in resistance of Pseudomonas aeruginosa to ciprofloxacin
Brazas, Antimicrobial agents and chemotherapy 2007 - “...PA4316 PA4422 PA4466 PA4700 PA4700 PA4756 PA4763 PA4961 PA5016 PA5208 PA5279 PA5345 a Gene name ilvD lon lon lon gbt recA xseA sbcB sbcB mrcB mrcB carB recN...”
PA14_69700 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
PA14_RS28410 DUF484 family protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 7:227 / 233 (94.8%), covers 99.6% of PF04340, 293.4 bits
- SOS-Independent Pyocin Production in P. aeruginosa Is Induced by XerC Recombinase Deficiency
Baggett, mBio 2021 - “...commits only some cells to pyocin production and prevents widespread cell lysis. RESULTS Deletion of PA14_69700 results in substantial upregulation of pyocin genes. In previous work, we showed that an in-frame deletion of an uncharacterized gene, PA14_69700 (also known as PA14_RS28410 ), resulted in enhanced biofilm...”
- Colony-morphology screening uncovers a role for the Pseudomonas aeruginosa nitrogen-related phosphotransferase system in biofilm formation
Cabeen, Molecular microbiology 2016 - “...in biofilm formation. Our screen, which identified most known biofilm-related genes, also uncovered PA14_16550 and PA14_69700 , deletions of which abrogated and augmented biofilm formation, respectively. We also identified ptsP , which encodes enzyme I of the nitrogen-regulated phosphotransferase (PTS Ntr ) system, as being important...”
- “...included PA14_16550 (orthologous to PA3699 ; hereafter 16550 ), which encodes a TetR-type DNA repressor; PA14_69700 (orthologous to PA5279 ; hereafter 69700 ), which encodes an uncharacterized GAF-domain protein; and ptsP , which encodes enzyme I of the nitrogen-regulated phosphotransferase (PTS Ntr ) system. Insertions in...”
- SOS-Independent Pyocin Production in P. aeruginosa Is Induced by XerC Recombinase Deficiency
Baggett, mBio 2021 - “...work, we showed that an in-frame deletion of an uncharacterized gene, PA14_69700 (also known as PA14_RS28410 ), resulted in enhanced biofilm formation by P. aeruginosa ( 29 ). To understand the mechanism by which 69700 deletion modulates biofilm formation, we performed transcriptomic analysis. We extracted RNA...”
VAB027_RS00575 DUF484 family protein from Vibrio cholerae
Aligns to 4:221 / 232 (94.0%), covers 99.1% of PF04340, 286.8 bits
CCNA_00350 hypothetical protein from Caulobacter crescentus NA1000
Aligns to 7:225 / 226 (96.9%), covers 99.1% of PF04340, 259.5 bits
NJ56_05265 DUF484 domain-containing protein from Yersinia ruckeri
Aligns to 10:232 / 234 (95.3%), covers 97.8% of PF04340, 246.4 bits
Or search for genetic data about PF04340 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory