Family Search for PF04340 (DUF484)
PF04340 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
PA5279 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 7:227 / 233 (94.8%), covers 99.5% of PF04340, 308.4 bits
- The emergence of cefiderocol resistance in Pseudomonas aeruginosa from a heteroresistant isolate during prolonged therapy
Teran, Antimicrobial agents and chemotherapy 2024 (secret) - Colony-morphology screening uncovers a role for the Pseudomonas aeruginosa nitrogen-related phosphotransferase system in biofilm formation
Cabeen, Molecular microbiology 2016 - “...to PA3699 ; hereafter 16550 ), which encodes a TetR-type DNA repressor; PA14_69700 (orthologous to PA5279 ; hereafter 69700 ), which encodes an uncharacterized GAF-domain protein; and ptsP , which encodes enzyme I of the nitrogen-regulated phosphotransferase (PTS Ntr ) system. Insertions in these genes were...”
- “...is distinct from a role in lasR repression. The third newly identified gene, 69700 ( PA5279 in PAO1), is notable because its product inhibits biofilm formation and because it contains a crystallographically validated GAF domain of unknown function (PDB 3E98). GAF domains are generally considered small...”
- Structure of the cytoplasmic region of PelD, a degenerate diguanylate cyclase receptor that regulates exopolysaccharide production in Pseudomonas aeruginosa
Whitney, The Journal of biological chemistry 2012 - “...of a P. aeruginosa GAF domain of unknown function (PA5279; Protein Data Bank code 3E98) solved by the Joint Center for Structural Genomics contains an...”
- “...region. Cartoon representation of P. aeruginosa PelD, P. aeruginosa PA5279, and H. sapiens PDE2A. For each protein, the GAF domain(s) is displayed in blue with...”
- Role of lon, an ATP-dependent protease homolog, in resistance of Pseudomonas aeruginosa to ciprofloxacin
Brazas, Antimicrobial agents and chemotherapy 2007 - “...PA4316 PA4422 PA4466 PA4700 PA4700 PA4756 PA4763 PA4961 PA5016 PA5208 PA5279 PA5345 a Gene name ilvD lon lon lon gbt recA xseA sbcB sbcB mrcB mrcB carB recN...”
PA14_69700 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
PA14_RS28410 DUF484 family protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 7:227 / 233 (94.8%), covers 99.5% of PF04340, 306.9 bits
- SOS-Independent Pyocin Production in P. aeruginosa Is Induced by XerC Recombinase Deficiency
Baggett, mBio 2021 - “...commits only some cells to pyocin production and prevents widespread cell lysis. RESULTS Deletion of PA14_69700 results in substantial upregulation of pyocin genes. In previous work, we showed that an in-frame deletion of an uncharacterized gene, PA14_69700 (also known as PA14_RS28410 ), resulted in enhanced biofilm...”
- Colony-morphology screening uncovers a role for the Pseudomonas aeruginosa nitrogen-related phosphotransferase system in biofilm formation
Cabeen, Molecular microbiology 2016 - “...in biofilm formation. Our screen, which identified most known biofilm-related genes, also uncovered PA14_16550 and PA14_69700 , deletions of which abrogated and augmented biofilm formation, respectively. We also identified ptsP , which encodes enzyme I of the nitrogen-regulated phosphotransferase (PTS Ntr ) system, as being important...”
- “...included PA14_16550 (orthologous to PA3699 ; hereafter 16550 ), which encodes a TetR-type DNA repressor; PA14_69700 (orthologous to PA5279 ; hereafter 69700 ), which encodes an uncharacterized GAF-domain protein; and ptsP , which encodes enzyme I of the nitrogen-regulated phosphotransferase (PTS Ntr ) system. Insertions in...”
- SOS-Independent Pyocin Production in P. aeruginosa Is Induced by XerC Recombinase Deficiency
Baggett, mBio 2021 - “...work, we showed that an in-frame deletion of an uncharacterized gene, PA14_69700 (also known as PA14_RS28410 ), resulted in enhanced biofilm formation by P. aeruginosa ( 29 ). To understand the mechanism by which 69700 deletion modulates biofilm formation, we performed transcriptomic analysis. We extracted RNA...”
YigA / b3810 DUF484 domain-containing protein YigA from Escherichia coli K-12 substr. MG1655 (see paper)
b3810 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 10:233 / 235 (95.3%), covers 99.5% of PF04340, 301.8 bits
VAB027_RS00575 DUF484 family protein from Vibrio cholerae
Aligns to 4:221 / 232 (94.0%), covers 99.5% of PF04340, 301.0 bits
c4731 Hypothetical protein yigA from Escherichia coli CFT073
Aligns to 10:233 / 235 (95.3%), covers 99.5% of PF04340, 299.2 bits
- ESCRT-III mediates budding across the inner nuclear membrane and regulates its integrity
Arii, Nature communications 2018 - “...Abcam, Cambridge, UK; 1:1000), CHMP4C (ab155668; Abcam; 1:500), lamin B1 (ab16048-100; Abcam; 1:1000) and calnexin (c4731; Sigma; 1:2000); and commercial mouse polyclonal antibodies against CHMP4A (ab67058; Abcam; 1:500). Mouse polyclonal antibodies against UL31(1:500) and rabbit polyclonal antibodies against UL34 (1:2000) were reported previously 61 . Establishment...”
- Herpes Simplex Virus 1 UL34 Protein Regulates the Global Architecture of the Endoplasmic Reticulum in Infected Cells
Maeda, Journal of virology 2017 - “...antibodies to CD98hc (H-300; Santa Cruz Biotechnology), calnexin (c4731; Sigma), and lamin B1 (ab16048-100; Abcam); and commercial goat polyclonal antibody to 1...”
- Role of herpes simplex virus 1 immediate early protein ICP22 in viral nuclear egress
Maruzuru, Journal of virology 2014 - “...Sigma) and rabbit polyclonal antibodies to calnexin (c4731; Sigma), lamin B1 (ab16048-100; Abcam), Flag (DDDDK; MBL), and VP23 (CAC-CT-HSV-UL18; CosmoBio)....”
CCNA_00350 hypothetical protein from Caulobacter crescentus NA1000
Aligns to 7:225 / 226 (96.9%), covers 98.6% of PF04340, 274.5 bits
NJ56_05265 DUF484 domain-containing protein from Yersinia ruckeri
Aligns to 10:232 / 234 (95.3%), covers 98.2% of PF04340, 250.2 bits
Or search for genetic data about PF04340 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory