PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04363 (DUF496)

PF04363.12 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YPO1560 conserved hypothetical protein (NCBI ptt file) from Yersinia pestis CO92
YPTB1571 hypothetical protein (NCBI) from Yersinia pseudotuberculosis IP 32953
Aligns to 9:101 / 105 (88.6%), covers 98.9% of PF04363, 158.3 bits

YeeX / b2007 DUF496 domain-containing protein YeeX from Escherichia coli K-12 substr. MG1655 (see 4 papers)
b2007 conserved protein (RefSeq) from Escherichia coli str. K-12 substr. MG1655
NP_416511 DUF496 domain-containing protein YeeX from Escherichia coli str. K-12 substr. MG1655
Aligns to 8:100 / 109 (85.3%), covers 98.9% of PF04363, 155.5 bits

SF2067 putative alpha helix protein (NCBI ptt file) from Shigella flexneri 2a str. 301
Aligns to 30:122 / 131 (71.0%), covers 98.9% of PF04363, 155.0 bits

STY2264 conserved hypothetical protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi str. CT18
P67605 UPF0265 protein YeeX from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Aligns to 8:100 / 111 (83.8%), covers 98.9% of PF04363, 154.5 bits

HD1377 conserved hypothetical protein (NCBI) from Haemophilus ducreyi 35000HP
Aligns to 9:101 / 111 (83.8%), covers 97.8% of PF04363, 146.3 bits

VCA0741 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 1:93 / 106 (87.7%), covers 98.9% of PF04363, 146.0 bits

M892_24630 DUF496 family protein from Vibrio campbellii ATCC BAA-1116
Aligns to 1:93 / 104 (89.4%), covers 98.9% of PF04363, 141.5 bits

HI1168 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 9:101 / 114 (81.6%), covers 98.9% of PF04363, 138.1 bits

PM0836 unknown (NCBI ptt file) from Pasteurella multocida subsp. multocida str. Pm70
Aligns to 9:101 / 112 (83.0%), covers 98.9% of PF04363, 134.7 bits

Or search for genetic data about PF04363 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory