Family Search for PF04367 (DUF502)

Running HMMer for PF04367

PF04367 hits 14 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Rru_A1729 Protein of unknown function DUF502 from Rhodospirillum rubrum ATCC 11170
Aligns to 82:187 / 258 (41.1%), covers 100.0% of PF04367, 123.3 bits

• Investigation of candidate genes involved in the rhodoquinone biosynthetic pathway in Rhodospirillum rubrum
  Campbell, PloS one 2019
  • “...Ubiquinone/menaquinone biosynthesis methyltransferase Rru_A2106 7.7 -68.4 16QF5 Hypothetical protein Rru_A3606 7.1 -31.8 16RW4 Hypothetical protein Rru_A1729 6.9 -35.2 16YKK Hypothetical protein Rru_A3004 4.5 -73.4 16Q21 Class I and Class II aminotransferases Rru_A3121 3.2 -170.0 Asparagine synthase Rru_A3231 3.0 -57.0 1748D Isoprenoid biosynthesis protein with amidotransferase-like domain...”
  • “...or rquA expression. In contrast, reduced amounts of both Q and RQ were observed in Rru_A1729 in the absence of oxygen, while little variance was observed under semi-aerobic conditions. These results indicate that Rru_A1729 may be required to achieve growth equivalent to the WT strain in...”

CTL0678 putative inner membrane protein from Chlamydia trachomatis 434/Bu
Aligns to 81:187 / 233 (45.9%), covers 97.2% of PF04367, 103.9 bits

• Transposon Mutagenesis in Chlamydia trachomatis Identifies CT339 as a ComEC Homolog Important for DNA Uptake and Lateral Gene Transfer
  LaBrie, mBio 2019
  • “...ct414 ) h pmpC Polymorphic outer membrane protein 802593 4,242/5,326 PQKGY N RLDDKSPVX [S1455N; 1,424/1,774] ctl0678 ( ct421 ) Hypothetical 804491 686/702 TSPFI T GWMISPRSDAQWNENSRX [L444T; 462/450] ctl0707 ( ct447 ) recJ Single-stranded DNA-specific exonuclease 836380 1,311/1,755 DFAAG L NRLDDKSPVX [M438L; 447/584] ctl0708a ( ct448 )...”

CT421 hypothetical protein from Chlamydia trachomatis D/UW-3/CX
Aligns to 81:187 / 233 (45.9%), covers 97.2% of PF04367, 102.7 bits

• Transposon Mutagenesis in Chlamydia trachomatis Identifies CT339 as a ComEC Homolog Important for DNA Uptake and Lateral Gene Transfer
  LaBrie, mBio 2019
  • “...h pmpC Polymorphic outer membrane protein 802593 4,242/5,326 PQKGY N RLDDKSPVX [S1455N; 1,424/1,774] ctl0678 ( ct421 ) Hypothetical 804491 686/702 TSPFI T GWMISPRSDAQWNENSRX [L444T; 462/450] ctl0707 ( ct447 ) recJ Single-stranded DNA-specific exonuclease 836380 1,311/1,755 DFAAG L NRLDDKSPVX [M438L; 447/584] ctl0708a ( ct448 ) Bifunctional preprotein...”
• Identification of Chlamydia trachomatis Antigens Recognized by T Cells From Highly Exposed Women Who Limit or Resist Genital Tract Infection
  Russell, The Journal of infectious diseases 2016
  • “...msbA ABC transporter ATP binding protein/permease 0.236 4.77 .039 CT421 . . . Hypothetical protein 0.283 2.97 .039 CT307 atpB V-type ATP synthase subunit B...”
• Profiling of human antibody responses to Chlamydia trachomatis urogenital tract infection using microplates arrayed with 156 chlamydial fusion proteins
  Sharma, Infection and immunity 2006
  • “...grpE CT396, dnaK CT406, hypothetical CT407, dksA CT421, hypothetical CT422, metalloproteas CT425, hypothetical CT427, hypothetical CT431, clpP CT442, crpA...”

GRMZM2G052200 uncharacterized protein LOC100193766 from Zea mays
Aligns to 115:220 / 273 (38.8%), covers 95.3% of PF04367, 99.1 bits

• The dynamics of DNA methylation in maize roots under Pb stress
  Ding, International journal of molecular sciences 2014
  • “...7.01 Signal recognition particle, SRP9 subunit GRMZM2G427301 3.16 2.38 3.25 Protein of unknown function DUF5Unknown2 GRMZM2G052200 4.11 3.38 4 Protein of unknown function DUF1754, eukaryotic GRMZM2G093405 0.55 0.34 0.59 Paraneoplastic encephalomyelitis antigen GRMZM2G392516 10.11 7.29 8.01 P-type ATPase, A domain GRMZM2G082487 2.91 2.19 2.4 Leucine-rich repeat...”

LCV1_ARATH / Q8VY49 Protein LIKE COV 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 102:207 / 256 (41.4%), covers 95.3% of PF04367, 96.9 bits

NP_565464 CONTINUOUS VASCULAR RING protein (DUF502) from Arabidopsis thaliana
AT2G20120 COV1 (CONTINUOUS VASCULAR RING) from Arabidopsis thaliana
Aligns to 112:217 / 268 (39.6%), covers 95.3% of PF04367, 96.7 bits

• CONTINUOUS VASCULAR RING (COV1) is a trans-Golgi network-localized membrane protein required for Golgi morphology and vacuolar protein sorting.
  Shirakawa, Plant & cell physiology 2014 (PubMed)
  • GeneRIF: the novel tans Golgi network-localized protein COV1 is required for Golgi morphology, vacuolar trafficking and myrosin cell development.
• Transcription factor NTL9 negatively regulates Arabidopsis vascular cambium development during stem secondary growth
  Sugimoto, Plant physiology 2022
  • “...ARF5 (At1G19850), AtERF1 (At4G17500), ERF018 (At1G74930), ERF109 (At4G34410), JAZ7 (At2G34600), JAZ10 (At5G13220), MYC2 (At1G32640), COV1 (At2G20120), HCA2 (At5G62940), MOL1 (At5G51350), RUL1 (At5G05160), JUL1 (At3G15680), JUL2 (At5g25490), and UBC9 (At4g27960). Supplemental data The following materials are available in the online version of this article. Supplemental Figure S1...”
• Vascular Cambium Development
  Nieminen, The arabidopsis book 2015
  • “...a similar phenotype is continuous vascular ring (cov1; At2g20120) (Parker et al., 2003). Recently, COV1 was identified to be a transGolgi network localized...”
• Dynamic evolution at pericentromeres
  Hall, Genome research 2006
  • “...At2g03330 At2g26610 At5g06480 At5g06480 At3g42150 At4g10080 At5g35695 At5g64370 At2g20120 cDNA EST, ma cDNA cDNA cDNA ma cDNA ma, mpss MPSS cDNA cDNA cDNA cDNA...”

COV1_ARATH / F4IUE7 Protein CONTINUOUS VASCULAR RING 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 112:217 / 268 (39.6%), covers 95.3% of PF04367, 96.7 bits

• function: Involved in the regulation of vascular patterning in the stem, probably by negatively regulating the differentiation of vascular tissue.

B8A2N0 COV1 from Zea mays
Aligns to 123:228 / 281 (37.7%), covers 95.3% of PF04367, 95.5 bits

• Proteomics reveals the effects of drought stress on the kernel development and starch formation of waxy maize
  Guo, BMC plant biology 2021
  • “...] B6SLJ0 Ninja-family protein 3 MODD Os03g0214200 [ 36 ] B8A0U6 O-fucosyltransferase family protein Zm00001d006931 B8A2N0 COV1 Zm00001d053350 K7TSG6 Rhodanese-like domain-containing protein 19 mitochondrial Zm00001d025081 K7V945 EMB1374 isoform 1 Zm00001d008281 Downregulated A0A1D6H5J5 GDSL esterase/lipase Zm00001d016130 BS1 Os02g0250400 [ 37 ] A0A1D6KN97 Germin-like protein Zm00001d032047 A0A1D6KR63 Monocopper...”

AT1G43130 LCV2 (LIKE COV 2) from Arabidopsis thaliana
Aligns to 98:203 / 261 (40.6%), covers 95.3% of PF04367, 94.0 bits

• Transcriptome-wide high-throughput deep m(6)A-seq reveals unique differential m(6)A methylation patterns between three organs in Arabidopsis thaliana
  Wan, Genome biology 2015
  • “...AT1G56000, AT4G17150, AT5G08470, AT4G16070, AT4G30993, AT3G20560 [ 18 , 34 36 ] Signal transduction AT1G03060, AT1G43130, AT1G48090, AT1G51690, AT1G58250, AT3G46830, AT3G49600, AT4G38200, AT5G06260, AT5G28900, AT5G35180, AT5G49470, AT5G39760, AT2G15240, AT3G55850, AT1G13180, AT1G10522, AT1G67890, AT5G07770, AT5G06350, AT4G02970, AT1G58230, AT2G46700, AT3G18040, AT5G07770, AT1G74720 [ 19 , 28 , 33...”

LOC109734806 protein LIKE COV 2 from Aegilops tauschii subsp. strangulata
Aligns to 290:395 / 450 (23.6%), covers 95.3% of PF04367, 90.7 bits

• Putative candidate genes responsible for leaf rolling in rye (Secale cereale L.)
  Myśków, BMC genetics 2018
  • “...subsp. tauschii 97 97 8% 6.00E-16 95% XM_020319955.1 XrPt507717 678 3R protein LIKE COV 2 (LOC109734806), mRNA Aegilops tauschii subsp. tauschii 279 279 24% 5.00E-71 96% XM_020293989.1 XrPt507473 599 3R Fhb1 region genomic sequence Triticum aestivum cv Sumai 3 60 60 5% 7.00E-05 97% KX907434.1 XrPt401081...”

HVO_2020 Protein of unknown function (DUF502) family from Haloferax volcanii DS2
Aligns to 91:197 / 267 (40.1%), covers 100.0% of PF04367, 85.7 bits

• Identification of structural and regulatory cell-shape determinants in Haloferax volcanii
  Schiller, Nature communications 2024
  • “...hvo_2046 to hvo_2061 , which encodes many Agl15 N -glycosylation pathway proteins, and hvo_2013 to hvo_2020 (Supplementary Note 4 ). To determine a list of proteins with the strongest evidence for involvement in shape determination, we focused on those that showed differential abundance across all three...”
• High throughput sequencing reveals a plethora of small RNAs including tRNA derived fragments in Haloferax volcanii
  Heyer, RNA biology 2012
  • “...of strain hts4 sRNA Hts4 is encoded on the main chromosome between genes HVO_2019 and HVO_2020, which encode a putative PRC-barrel domain and a protein of unknown function (DUF502). The sRNA is expressed at all conditions with lower expression levels at standard and high temperature conditions,...”

VNG_RS08220 DUF502 domain-containing protein from Halobacterium salinarum NRC-1
Aligns to 54:151 / 205 (47.8%), covers 99.1% of PF04367, 80.7 bits

• Halobacterium salinarum and Haloferax volcanii Comparative Transcriptomics Reveals Conserved Transcriptional Processing Sites
  Ibrahim, Genes 2021
  • “...present in orthologous gene pairs, we found only 5 genes: dppA2, iscU, nosF1, atpI and VNG_RS08220 (loci pairs VNG_RS09900-HVO_RS07725, VNG_RS09660-HVO_RS05210, VNG_RS09315-HVO_RS19230, VNG_RS08320-HVO_RS06205, VNG_RS08220-HVO_RS06290, respectively). The case of dppA2 (alternatively, dppD), part of a dipeptide ABC transporter dppFABC operon, is particularly interesting since its constituents were shown...”

BAV2007 membrane protein from Bordetella avium 197N
Aligns to 56:162 / 209 (51.2%), covers 99.1% of PF04367, 73.7 bits

• Detection of small RNAs in Bordetella pertussis and identification of a novel repeated genetic element
  Hot, BMC genomics 2011
  • “...- - - - - - - - - - - - 2 BAV2006 > BAV2007 > 12 - - - - - - - - - - - - - - - 3 BAV3179 > BAV3180 < 13 - - - - - - -...”

PA5151 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 71:175 / 229 (45.9%), covers 99.1% of PF04367, 53.0 bits

• 1,2,4-Triazolidine-3-thiones Have Specific Activity against Acinetobacter baumannii among Common Nosocomial Pathogens
  Corey, ACS infectious diseases 2017
  • “...MRSN Pseudomonas aeruginosa PA4910 MRSN Pseudomonas aeruginosa PA4962 MRSN Pseudomonas aeruginosa PA5105 MRSN Pseudomonas aeruginosa PA5151 MRSN Pseudomonas aeruginosa PA105738 Clinton Murray/BAMC Pseudomonas aeruginosa PA105777 Clinton Murray/BAMC Pseudomonas aeruginosa PA105819 Clinton Murray/BAMC Pseudomonas aeruginosa PA105857 Clinton Murray/BAMC Pseudomonas aeruginosa PA105880 Clinton Murray/BAMC Staphylococcus aureus MRSA5836 MRSN...”

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