Family Search for PF04391 (DUF533)
PF04391 hits 24 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
PP1487, PP_1487 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 40:221 / 226 (80.5%), covers 99.4% of PF04391, 235.7 bits
PA3712 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 40:223 / 231 (79.7%), covers 99.4% of PF04391, 233.4 bits
- Inhibition of the clinical isolates of Acinetobacter baumannii by Pseudomonas aeruginosa: In vitro assessment of a case-based study
Huang, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi 2022 (PubMed)- “...PA3772, and ATCC27853) or a low (PA3613, PA3625, PA3712, PA3715, and PA3744) degree of inhibition against AB strains. 0.25 mg/ml PCN had a clearer inhibition...”
- “...of 0.9, 0.7 and 0.7 cm, respectively, whereas PA3625 and PA3712 did not show any inhibition zone; (B) In this representative sup filter plate, PA3681 and...”
- Emergence of a Pseudomonas aeruginosa Hypermutator Strain During the Course of Ventilator-Associated Pneumonia
Nozick, 2022 - Membrane proteases and aminoglycoside antibiotic resistance
Hinz, Journal of bacteriology 2011 - “...protease yegH (PA1331) 7.4 Putative transporter yebE (PA3712) PA5528 4.9 4.7 Hypothetical protein Hypothetical protein yceJ (PA3575) nlpD (PA3787) yccA (PA2604)...”
- Targeting a bacterial stress response to enhance antibiotic action
Lee, Proceedings of the National Academy of Sciences of the United States of America 2009 - “...induction by tobramycin requires AmgRS Gene* PA2830 PA1331 PA2549 PA3712 PA5528 PA3575 PA1882 PA3787 PA2604 E. coli homologue htpX yegH ygjT yebE None yceJ sugE...”
VC0873 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 35:211 / 214 (82.7%), covers 99.4% of PF04391, 220.7 bits
BB4284 putative membrane protein from Bordetella bronchiseptica RB50
Aligns to 39:222 / 226 (81.4%), covers 99.4% of PF04391, 212.7 bits
BP3218 putative membrane protein from Bordetella pertussis Tohama I
Aligns to 39:222 / 226 (81.4%), covers 99.4% of PF04391, 211.7 bits
- Role of Bordetella pertussis RseA in the cell envelope stress response and adenylate cyclase toxin release
Hanawa, Pathogens and disease 2013 - “...cyaA and cyaB promoters The DNA regions upstream of the BP0893, BP2014 ( acnA ), BP3218, and BP3748 ( rpoH ) genes of B. pertussis UT25Sm1 were amplified by PCR from genomic DNA using the primer pairs: BP0893-EcoRI and BP0893-XbaI, BP2014-EcoRI and BP2014-XbaI, BP3218-EcoRI and BP3218-XbaI,...”
- “...several candidate E dependent promoter sequences upstream of the genes of unknown function, BP0893 and BP3218, as well as BP2014 (annotated as acnA , encoding a putative aconitase A) and BP3748, an ortholog of rpoH . In characterized bacterial systems, rpoH expression is regulated by E...”
A6W98_RS17070 tellurite resistance TerB family protein from Rhodovulum sulfidophilum DSM 1374
Aligns to 10:228 / 237 (92.4%), covers 97.8% of PF04391, 193.7 bits
BAB1_0893 Protein of unknown function DUF533 from Brucella melitensis biovar Abortus 2308
Aligns to 34:230 / 235 (83.8%), covers 98.3% of PF04391, 186.6 bits
SMc03152 HYPOTHETICAL TRANSMEMBRANE PROTEIN from Sinorhizobium meliloti 1021
Aligns to 34:227 / 234 (82.9%), covers 97.8% of PF04391, 179.6 bits
Avi_3814 hypothetical protein from Agrobacterium vitis S4
Aligns to 35:224 / 234 (81.2%), covers 96.6% of PF04391, 178.7 bits
HAPS_2254 tellurite resistance TerB family protein from Glaesserella parasuis SH0165
Aligns to 53:228 / 230 (76.5%), covers 99.4% of PF04391, 171.6 bits
- Transcriptome analysis of heat resistance regulated by quorum sensing system in Glaesserella parasuis
Zhang, Frontiers in microbiology 2022 - “...results of RT-qPCR confirmed that pncB , HAPS_0219 , rcnB , rcnA , rseA , HAPS_2254 , HAPS_1551 , and aspA genes were up-regulated, and htrA , acnB , HAPS_2130 , icd , ulaA , gltA , HAPS_1218 , and mlc genes were down-regulated in the...”
CH1034_240296 tellurite resistance TerB family protein from Klebsiella pneumoniae
Aligns to 27:210 / 219 (84.0%), covers 96.6% of PF04391, 169.4 bits
Q9K182 Inner membrane protein from Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Aligns to 28:202 / 204 (85.8%), covers 98.9% of PF04391, 167.7 bits
NGO1709 hypothetical protein from Neisseria gonorrhoeae FA 1090
Q5F657 3-hydroxyisobutyrate dehydrogenase from Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Aligns to 28:202 / 204 (85.8%), covers 98.9% of PF04391, 166.6 bits
Q82V70 DUF533 domain-containing protein from Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)
Aligns to 79:262 / 268 (68.7%), covers 94.9% of PF04391, 164.4 bits
- Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria
Zorz, Frontiers in microbiology 2018 - “...1.5, 0.78, and 0.71%, respectively. N. europaea also had uncharacterized singleton proteins Q82VY9 (PepSY domain), Q82V70 (DUF533 domain), and Q82TW7 (LTXXQ motif) highly expressed to 0.75, 0.38, and 0.23% of the proteome. High expression of uncharacterized proteins without orthologs in these AOB suggests that more work...”
MHA_0531 tellurite resistance TerB family protein from Mannheimia haemolytica PHL213
Aligns to 34:207 / 209 (83.3%), covers 98.9% of PF04391, 161.6 bits
COI_1309 tellurite resistance TerB family protein from Mannheimia haemolytica serotype A2 str. OVINE
Aligns to 34:207 / 209 (83.3%), covers 98.9% of PF04391, 160.1 bits
YebE / b1846 DUF533 domain-containing inner membrane protein YebE from Escherichia coli K-12 substr. MG1655 (see 2 papers)
P33218 Inner membrane protein YebE from Escherichia coli (strain K12)
b1846 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 29:210 / 219 (83.1%), covers 97.2% of PF04391, 159.2 bits
- Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli
Kumar, Proceedings of the National Academy of Sciences of the United States of America 2004 - “...P30977 P31220 P24203 P77475 P77482 P24250 P25538 P33940 P33218 P42641 P23199 Protein Numbers in parentheses correspond to the number of peptides detected that...”
- 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
, Haematologica 2013 - Global analysis of extracytoplasmic stress signaling in Escherichia coli
Bury-Moné, PLoS genetics 2009 - “...modulated by CpxR. Genes/putative operon a bnum b Product(s) description/function Fold change(s) c yebE Y b1846 Conserved inner membrane protein 9.8 yiaF b3554 Putative inner membrane lipoprotein 5.9 ( 7.71 ) yhaH yhaI yhaJ b3103-5 Predicted inner membrane protein; putative inner membrane protein; predicted DNA binding...”
- Elucidation of the antibacterial mechanism of the Curvularia haloperoxidase system by DNA microarray profiling
Hansen, Applied and environmental microbiology 2004 - “...b1650 N-Ethylmaleimide reductase b1651 Lactoylglutathione lyase b1846 ORF, hypothetical protein b1970 ORF, hypothetical protein b1987 Transcriptional regulator...”
GW13_PRO0298 tellurite resistance TerB family protein from Salmonella enterica subsp. enterica serovar Cerro
Aligns to 29:210 / 219 (83.1%), covers 97.2% of PF04391, 158.6 bits
SEEHRA37_07475 tellurite resistance TerB family protein from Salmonella enterica subsp. enterica serovar Heidelberg str. SARA37
Aligns to 29:210 / 219 (83.1%), covers 97.2% of PF04391, 158.6 bits
RSP_1549 hypothetical protein from Rhodobacter sphaeroides 2.4.1
Aligns to 31:217 / 227 (82.4%), covers 98.9% of PF04391, 157.7 bits
- Convergence of the transcriptional responses to heat shock and singlet oxygen stresses
Dufour, PLoS genetics 2012 - “...Unknown function RSP_0126, RSP_0362, RSP_0363, RSP_0408, RSP_0719, RSP_0999, RSP_1104, RSP_1193, RSP_1204, RSP_1238, RSP_1241, RSP_1360, RSP_1406, RSP_1549, RSP_1563, RSP_1573, RSP_1581, RSP_1615, RSP_1671, RSP_1684, RSP_1743, RSP_1852, RSP_2121, RSP_2125, RSP_2214, RSP_2219, RSP_2387, RSP_2638, RSP_2640, RSP_2641, RSP_2739, RSP_2763, RSP_2764, RSP_2816, RSP_2952, RSP_2953, RSP_3067, RSP_3068, RSP_3378, RSP_3426, RSP_3552, RSP_3597, RSP_3598, RSP_3634,...”
STM1880 putative inner membrane protein from Salmonella typhimurium LT2
Aligns to 29:210 / 219 (83.1%), covers 97.2% of PF04391, 157.5 bits
APL_1609 hypothetical protein from Actinobacillus pleuropneumoniae L20
Aligns to 9:184 / 186 (94.6%), covers 90.4% of PF04391, 152.3 bits
BMEI1092 hypothetical protein from Brucella melitensis 16M
Aligns to 1:158 / 163 (96.9%), covers 79.2% of PF04391, 152.3 bits
slr1194 hypothetical protein from Synechocystis sp. PCC 6803
Aligns to 2:122 / 222 (54.5%), covers 60.7% of PF04391, 32.2 bits
Or search for genetic data about PF04391 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory