Family Search for PF04391 (DUF533)

PF04391.12 hits 25 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PP_1487 conserved hypothetical protein (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 40:221 / 226 (80.5%), covers 99.4% of PF04391, 227.1 bits

• A Novel Small RNA on the Pseudomonas putida KT2440 Chromosome Is Involved in the Fitness Cost Imposed by IncP-1 Plasmid RP4
  Kawano, Frontiers in microbiology 2020
  • “...T Two component transcriptional regulator Up 5 lon-1 PP_1443 O ATP-dependent protease La Up 6 PP_1487 PP_1487 S Hypothetical protein Up 7 ibpA PP_1982 O Heat shock protein Hsp20 Up 8 PP_2197 PP_2197 Hypothetical protein Up 9 PP_2198 PP_2198 G Glucose sorbosone dehydrogenase Up 10 PP_2285...”
• Differential proteomics and physiology of Pseudomonas putida KT2440 under filament-inducing conditions
  Crabbé, BMC microbiology 2012
  • “...domain protein PP_1210 gi|26987945 0.32* DNA-binding stress protein, putative PP_1478 gi|26988211 0.23* NADH:flavin oxidoreductase/NADH oxidase PP_1487 gi|26988220 0.40* Hypothetical protein PP_1487 PP_1506 Adk gi|26988238 0.34* Adenylate kinase PP_1661 gi|26988393 0.41* Dehydrogenase subunit, putative PP_1741 gi|26988472 0.28* Substrate-binding region of ABC-type glycine betaine transport system PP_1859 Ohr...”

PA3712 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 40:223 / 231 (79.7%), covers 99.4% of PF04391, 223.3 bits

• Membrane proteases and aminoglycoside antibiotic resistance
  Hinz, Journal of bacteriology 2011
  • “...protease yegH (PA1331) 7.4 Putative transporter yebE (PA3712) PA5528 4.9 4.7 Hypothetical protein Hypothetical protein yceJ (PA3575) nlpD (PA3787) yccA (PA2604)...”
• Targeting a bacterial stress response to enhance antibiotic action
  Lee, Proceedings of the National Academy of Sciences of the United States of America 2009
  • “...induction by tobramycin requires AmgRS Gene* PA2830 PA1331 PA2549 PA3712 PA5528 PA3575 PA1882 PA3787 PA2604 E. coli homologue htpX yegH ygjT yebE None yceJ sugE...”

VC0873 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 35:211 / 214 (82.7%), covers 98.9% of PF04391, 215.3 bits

• Metabolic Reprogramming of Vibrio cholerae Impaired in Respiratory NADH Oxidation Is Accompanied by Increased Copper Sensitivity
  Toulouse, Journal of bacteriology 2018
  • “...VC2432 VC1966 VC1249 VCA0858 VCA0032 VC0300 VCA0487 VCA0738 VC1031 VCA0900 VC0038 VC0873 VC0457 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.4 4.6 4.1 3.8 3...”
• Identification and characterization of OscR, a transcriptional regulator involved in osmolarity adaptation in Vibrio cholerae
  Shikuma, Journal of bacteriology 2009
  • “...metabolism VC0786 VCA0241 Hypothetical proteins VC0651 VC0669 VC0699 VC0873 VC1020 VC1035 VC1221 VC1253 dadA modulator modulator modulator modulator A C E F...”

BB4284 putative membrane protein (NCBI) from Bordetella bronchiseptica RB50
Aligns to 39:222 / 226 (81.4%), covers 99.4% of PF04391, 205.3 bits

• The type III secreted protein BspR regulates the virulence genes in Bordetella bronchiseptica
  Kurushima, PloS one 2012
  • “...EctB diaminobutyrate transaminase 0.03 BB2875 universal stress family protein 0.04 BB4467 putative membrane protein 0.04 BB4284 putative membrane protein 0.04 BB3926 putative cytochrome 0.05 ModB molybdate-binding periplasmic protein precursor 0.08 BB2813 putative uncharacterized protein 0.10 AtpF ATP synthase subunit b 0.11 BB1948 putative exported protein 0.12...”
• Construction and validation of a first-generation Bordetella bronchiseptica long-oligonucleotide microarray by transcriptional profiling the Bvg regulon
  Nicholson, BMC genomics 2007
  • “...transferase 4.96 0.32 BB4266 putative membrane protein 6.84 0.82 BB4269 putative glycosyl transferase 2.23 0.42 BB4284 putative membrane protein 2.96 0.14 Protein Folding and Ushering BB2320 dsbG thiol:disulfide interchange protein precursor 35.29 9.68 BB2991 fimB chaperone protein 11.20 7.71 BB3749 mucD serine protease; trypsin activity 2.75...”

BP3218 putative membrane protein (NCBI) from Bordetella pertussis Tohama I
Aligns to 39:222 / 226 (81.4%), covers 99.4% of PF04391, 204.2 bits

• Role of Bordetella pertussis RseA in the cell envelope stress response and adenylate cyclase toxin release
  Hanawa, Pathogens and disease 2013
  • “...cyaA and cyaB promoters The DNA regions upstream of the BP0893, BP2014 ( acnA ), BP3218, and BP3748 ( rpoH ) genes of B. pertussis UT25Sm1 were amplified by PCR from genomic DNA using the primer pairs: BP0893-EcoRI and BP0893-XbaI, BP2014-EcoRI and BP2014-XbaI, BP3218-EcoRI and BP3218-XbaI,...”
  • “...several candidate E dependent promoter sequences upstream of the genes of unknown function, BP0893 and BP3218, as well as BP2014 (annotated as acnA , encoding a putative aconitase A) and BP3748, an ortholog of rpoH . In characterized bacterial systems, rpoH expression is regulated by E...”

A6W98_RS17070 tellurite resistance TerB family protein from Rhodovulum sulfidophilum DSM 1374
Aligns to 10:228 / 237 (92.4%), covers 97.8% of PF04391, 194.6 bits

• A marine photosynthetic microbial cell factory as a platform for spider silk production
  Foong, Communications biology 2020
  • “...resistance genes encoding the TerB-family tellurite resistance protein were present at the loci A6W98_RS06280 and A6W98_RS17070. Both kanamycin and tellurite resistance features were used as selection markers to distinguish positive conjugants of R. sulfidophilum . The newly constructed pBBR1-P trc -MaSp1 plasmid contained (i) a trc...”

BAB1_0893 Protein of unknown function DUF533 (NCBI) from Brucella melitensis biovar Abortus 2308
Aligns to 34:230 / 235 (83.8%), covers 98.3% of PF04391, 192.9 bits

• Diverse genetic regulon of the virulence-associated transcriptional regulator MucR in Brucella abortus 2308
  Caswell, Infection and immunity 2013
  • “...BAB1_0271 BAB1_0324 BAB1_0745 BAB1_0750 BAB1_0751 BAB1_0893 BAB1_1125 BAB1_1352 BAB1_1398 BAB1_1487 BAB1_1489 BAB1_1509 BAB1_1529 BAB1_1536 BAB1_1604 BAB1_1689...”
• Brucella abortus choloylglycine hydrolase affects cell envelope composition and host cell internalization
  Marchesini, PloS one 2011
  • “...5.41 11.5 10.4 5.7 BAB2_0190 C 86 Hypothetical protein gi|17987375 5.01 4.53 28.1 17.6 5.4 BAB1_0893 U 97 Surface antigen gi|17988178 5.35 5.57 82.8 67.2 6.0 BAB1_0045 OM 106 Succinyl-CoA synthetasealpha chain gi|17986423 5.49 5.81 34.3 31.2 3.2 BAB1_1925 C 109 Aspartyl/glutamyl-tRNA amidotransferase subunit A gi|39931612...”

SMc03152 HYPOTHETICAL TRANSMEMBRANE PROTEIN (NCBI ptt file) from Sinorhizobium meliloti 1021
Aligns to 34:227 / 234 (82.9%), covers 98.3% of PF04391, 188.1 bits

• A Sinorhizobium meliloti RpoH-Regulated Gene Is Involved in Iron-Sulfur Protein Metabolism and Effective Plant Symbiosis under Intrinsic Iron Limitation
  Sasaki, Journal of bacteriology 2016
  • “...Smr Nmr Rm1021 with single crossover of pHM128 in SMc03152; Smr Nmr Rm1021 with single crossover of pHM129 in SMc04202; Smr Nmr Rm1021 with single crossover of...”
• Dual RpoH sigma factors and transcriptional plasticity in a symbiotic bacterium
  Barnett, Journal of bacteriology 2012
  • “...SMc02110 SMc02109 SMc02380 SMc02720 SMc02882 SMc02886 SMc02885 SMc03152 SMc03801 SMc04403 Gene set and unique identifiera TABLE 1 RpoH-dependent promoters...”

Avi_3814 hypothetical protein (RefSeq) from Agrobacterium vitis S4
Aligns to 34:224 / 234 (81.6%), covers 97.8% of PF04391, 187.7 bits

• Proteomic profiling of Rhizobium tropici PRF 81: identification of conserved and specific responses to heat stress
  Gomes, BMC microbiology 2012
  • “...Agrobacterium radiobacter 5.88/5.65 43777/53000 1.480.12 0.003 Cytoplasmic S - Function Unknown 58 gi|222149801 Hypothetical protein Avi_3814 Agrobacterium vitis 5.03/5.01 24632/29000 1.420.34 0.033 Periplasmic NO related COG 59 gi|209547526 Hypothetical protein Rleg2_5527 Rhizobium leguminosarum 6.02/5.89 33584/44000 1.570.13 0.002 Cytoplasmic 1 Theoretical/Experimental values. Da: Daltons. 2 1.00 in...”

CH1034_240296 tellurite resistance TerB family protein from Klebsiella pneumoniae
Aligns to 27:210 / 219 (84.0%), covers 96.6% of PF04391, 169.1 bits

• Transcriptional profiling of Klebsiella pneumoniae defines signatures for planktonic, sessile and biofilm-dispersed cells
  Guilhen, BMC genomics 2016
  • “...989.76 4255.17 2 CH1034_300259 truB tRNA pseudouridine synthase B 1963.34 1548.32 2797.65 1589.07 15569.23 2 CH1034_240296 yebE conserved hypothetical protein; putative inner membrane protein 385.81 448.95 315.41 608.81 5089.16 2 CH1034_190182 pspB phage-shock-protein B 147.34 256.45 198.93 298.93 1192.17 2 CH1034_190181 pspA phage-shock-protein A 855.89 991.23...”

V0SC60 Uncharacterized protein from Escherichia coli 907672
Aligns to 29:210 / 219 (83.1%), covers 97.2% of PF04391, 167.4 bits

• Proteomics-Based Mechanistic Investigation of Escherichia coli Inactivation by Pulsed Electric Field
  Liu, Frontiers in microbiology 2019
  • “...0.6030 0.0401 G0F3L2 Polyketide cyclase/dehydrase and lipid transport family protein, GN=UMNF18_3418 42.6 5 0.6011 0.0032 V0SC60 Uncharacterized protein, GN=HMPREF1595_04697 43.4 7 0.6010 0.0207 W9AKX1 50S ribosomal protein L30, GN=rpmD 57.6 4 0.6008 0.0219 W1F1V3 CDP-diacylglycerol pyrophosphatase, GN=cdh 25.1 6 0.5951 0.0127 W8ZP35 Uncharacterized protein, N=yqjE 20.9...”

Q82V70 Uncharacterized protein from Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)
Aligns to 58:262 / 268 (76.5%), covers 95.0% of PF04391, 165.3 bits

• Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria
  Zorz, Frontiers in microbiology 2018
  • “...1.5, 0.78, and 0.71%, respectively. N. europaea also had uncharacterized singleton proteins Q82VY9 (PepSY domain), Q82V70 (DUF533 domain), and Q82TW7 (LTXXQ motif) highly expressed to 0.75, 0.38, and 0.23% of the proteome. High expression of uncharacterized proteins without orthologs in these AOB suggests that more work...”

YebE / b1846 DUF533 domain-containing inner membrane protein YebE from Escherichia coli K-12 substr. MG1655 (see 2 papers)
P33218 Inner membrane protein YebE from Escherichia coli (strain K12)
b1846 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 29:210 / 219 (83.1%), covers 97.2% of PF04391, 164.2 bits

• Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli
  Kumar, Proceedings of the National Academy of Sciences of the United States of America 2004
  • “...P30977 P31220 P24203 P77475 P77482 P24250 P25538 P33940 P33218 P42641 P23199 Protein Numbers in parentheses correspond to the number of peptides detected that...”
• UEG Week 2017 Poster Presentations
  , United European gastroenterology journal 2017
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Global analysis of extracytoplasmic stress signaling in Escherichia coli
  Bury-Moné, PLoS genetics 2009
  • “...modulated by CpxR. Genes/putative operon a bnum b Product(s) description/function Fold change(s) c yebE Y b1846 Conserved inner membrane protein 9.8 yiaF b3554 Putative inner membrane lipoprotein 5.9 ( 7.71 ) yhaH yhaI yhaJ b3103-5 Predicted inner membrane protein; putative inner membrane protein; predicted DNA binding...”
• Elucidation of the antibacterial mechanism of the Curvularia haloperoxidase system by DNA microarray profiling
  Hansen, Applied and environmental microbiology 2004
  • “...b1650 N-Ethylmaleimide reductase b1651 Lactoylglutathione lyase b1846 ORF, hypothetical protein b1970 ORF, hypothetical protein b1987 Transcriptional regulator...”

c2258 Hypothetical protein yebE (NCBI ptt file) from Escherichia coli CFT073
Aligns to 29:210 / 219 (83.1%), covers 97.2% of PF04391, 164.0 bits

• Possible involvement of Escherichia coli 23S ribosomal RNA in peptide bond formation
  Nitta, RNA (New York, N.Y.) 1998 (secret)

GW13_PRO0298 tellurite resistance TerB family protein from Salmonella enterica subsp. enterica serovar Cerro
Aligns to 29:210 / 219 (83.1%), covers 97.2% of PF04391, 163.8 bits

• DNA phosphorothioate modifications influence the global transcriptional response and protect DNA from double-stranded breaks
  Gan, Scientific reports 2014
  • “...2.00 GW13_PRO0296 DNA damage-inducible protein YebG 3.02 0.36 0.47 GW13_PRO0297 Protein YebF 3.39 0.86 0.66 GW13_PRO0298 FIG004088: inner membrane protein YebE 3.23 0.82 1.08 GW13_PRO1056 DNA-damage-inducible protein I 4.06 0.35 0.70 GW13_PRO3190 DNA-damage-inducible protein F 2.41 0.46 0.64 GW13_PRO0041 Cell division inhibitor SulA 3.33 0.15 0.03...”

SEEHRA37_07475 tellurite resistance TerB family protein from Salmonella enterica subsp. enterica serovar Heidelberg str. SARA37
Aligns to 29:210 / 219 (83.1%), covers 97.2% of PF04391, 163.7 bits

• Comparative genomic analysis and virulence differences in closely related salmonella enterica serotype heidelberg isolates from humans, retail meats, and animals
  Hoffmann, Genome biology and evolution 2014
  • “...57 SEEHRA37_07110 1 Hypothetical protein TC L 162 SEEHRA37_23678 1 Hypothetical protein AC KT 227 SEEHRA37_07475 1 Nonannotated TC IV n/a SEEHRA37_contig14 2 Hypothetical protein AG QR 851 SEEHRA37_20355 2 Sensor kinase DpiB AT IF 67 SEEHRA37_10675 2 Notannotated CT P 63 SEEHRA37_contig6 2 Hypothetical protein...”

STM1880 putative inner membrane protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 29:210 / 219 (83.1%), covers 97.2% of PF04391, 162.3 bits

• Genome expression analyses revealing the modulation of the Salmonella Rcs regulon by the attenuator IgaA
  Mariscotti, Journal of bacteriology 2009
  • “...the Rcs regulonb Product igaA1 mutant vs WT STM1633 STM1705 STM1880 STM1982 STM1983 STM2080 STM1633 osmB yebE rcsA dsrB udg 2.3 3.0 2.2 3.6 2.4 2.5 1.9 0.9 0.06...”

t0997 conserved hypothetical protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 29:210 / 219 (83.1%), covers 97.2% of PF04391, 160.4 bits

• CASP13 target classification into tertiary structure prediction categories
  Kinch, Proteins 2019 (secret)

MHA_0531 tellurite resistance TerB family protein from Mannheimia haemolytica PHL213
Aligns to 34:207 / 209 (83.3%), covers 98.9% of PF04391, 160.0 bits

• A three-way comparative genomic analysis of Mannheimia haemolytica isolates
  Lawrence, BMC genomics 2010
  • “...colonize. One of the interesting effector protein from B, O and A1 (COK_1445, COI_1309 and MHA_0531) shows 20-40% identity to a transcription activator-like (TAL) type III effector, gene locus from Xanthomonas oryzae (AvrXa27), that activates the transcription of the host resistance gene Xa27 , resulting in...”

COI_1309 tellurite resistance TerB family protein from Mannheimia haemolytica serotype A2 str. OVINE
Aligns to 34:207 / 209 (83.3%), covers 98.9% of PF04391, 159.1 bits

• A three-way comparative genomic analysis of Mannheimia haemolytica isolates
  Lawrence, BMC genomics 2010
  • “...iron to colonize. One of the interesting effector protein from B, O and A1 (COK_1445, COI_1309 and MHA_0531) shows 20-40% identity to a transcription activator-like (TAL) type III effector, gene locus from Xanthomonas oryzae (AvrXa27), that activates the transcription of the host resistance gene Xa27 ,...”

Q9K182 Uncharacterized protein from Neisseria meningitidis serogroup B (strain MC58)
Aligns to 28:202 / 204 (85.8%), covers 98.9% of PF04391, 156.0 bits

• Towards New Drug Targets? Function Prediction of Putative Proteins of Neisseria meningitidis MC58 and Their Virulence Characterization
  Shahbaaz, Omics : a journal of integrative biology 2015
  • “...123. 124. 125. 126. 127. 128. 129. 130. 131. Q9K182 Q9K0Z5 Q9K0Y5 Q7DDQ0 Q9K0E2 Q9K0A4 Q9K072 Q9K019 Q9JZQ6 Q9JZJ3 Q9JS13 Q9JZA2 Q9JYN4 Q9JYL3 Q9JYL1 Q9JYJ0...”

Q5F657 3-hydroxyisobutyrate dehydrogenase from Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
NGO1709 hypothetical protein (NCBI) from Neisseria gonorrhoeae FA 1090
Aligns to 28:202 / 204 (85.8%), covers 98.9% of PF04391, 155.0 bits

• Quantitative proteomics of the Neisseria gonorrhoeae cell envelope and membrane vesicles for the discovery of potential therapeutic targets
  Zielke, Molecular & cellular proteomics : MCP 2014
  • “...Q5F8E6 Q5F766 Q5FAC8 Q5F520 Q5F5E5 Q5F5P4 Q5F5W7 Q5F657 Q5F676 Q5F6K2 Q5F6P5 Q5F7A6 Q5F7C7 Q5FAK6 Q5F9Q0 Q5F9E3 O87406 Name Putative carboxy-terminal processing...”
• Genome-wide discovery of epistatic loci affecting antibiotic resistance in Neisseria gonorrhoeae using evolutionary couplings
  Schubert, Nature microbiology 2019
  • “...0.956 1.63 10 10 13 0.021 0.000 0.979 0.000 CFX 1516685 1665722 penA (NGO1542) yebE (NGO1709) V160A K90E 0.959 1.63 10 10 8 0.021 0.000 0.067 0.912 CFX 1516861 1664127 penA (NGO1542) dinG (NGO1708) D101E A287T 0.950 3.08 10 8 4 0.021 0.000 0.177 0.802 CFX...”
• Quantitative proteomics of the Neisseria gonorrhoeae cell envelope and membrane vesicles for the discovery of potential therapeutic targets
  Zielke, Molecular & cellular proteomics : MCP 2014
  • “...NGO0831 NGO1320 pilM/NGO0098 NGO2119 NGO1984 NGO1873 NGO1802 NGO1709 NGO1686 NGO1549 NGO1504 NGO1274 NGO1251 NGO0028 lepB/NGO0343 pilX/NGO0455 NGO0425 1.73 0.17...”
• Manganese regulation of virulence factors and oxidative stress resistance in Neisseria gonorrhoeae
  Wu, Journal of proteomics 2010
  • “...NGO0794 bacterioferritin A bfrA L 17962 NGO0832 oxidoreductase, short chain reductase family N/A M 25965 NGO1709 conserved hypothetical protein N/A N 21913 NGO1583 conserved hypothetical protein N/A N 40892 NGO0361 conserved hypothetical protein (possible hemY) N/A N 45187 NGO0571 conserved hypothetical protein (possible MP) N/A N...”
  • “...57081 NGO0905 conserved hypothetical protein N/A N 25780 NGO1280 conserved hypothetical protein N/A N 53783 NGO1709 conserved hypothetical protein N/A N 21913 NGO1655 Neisseria-specific protein, uncharacterized N/A N 28555 NGO0387 conserved hypothetical protein N/A N 28733 NGO1656 possible cell-binding factor (possible protein export) N/A M 31514...”

APL_1609 hypothetical protein (NCBI) from Actinobacillus pleuropneumoniae L20
Aligns to 7:184 / 186 (95.7%), covers 92.2% of PF04391, 148.1 bits

• Host-pathogen interactions of Actinobacillus pleuropneumoniae with porcine lung and tracheal epithelial cells
  Auger, Infection and immunity 2009
  • “...APL_1374 APL_0465 APL_1919 APL_1138 APL_0443 APL_1656 APL_1203 APL_1609 APL_1881 APL_1244 Gene 1432 AUGER ET AL. INFECT. IMMUN. TABLE 2--Continued Locus tag...”

RSP_1549 hypothetical protein (NCBI) from Rhodobacter sphaeroides 2.4.1
Aligns to 31:217 / 227 (82.4%), covers 97.8% of PF04391, 144.4 bits

• Convergence of the transcriptional responses to heat shock and singlet oxygen stresses
  Dufour, PLoS genetics 2012
  • “...Unknown function RSP_0126, RSP_0362, RSP_0363, RSP_0408, RSP_0719, RSP_0999, RSP_1104, RSP_1193, RSP_1204, RSP_1238, RSP_1241, RSP_1360, RSP_1406, RSP_1549, RSP_1563, RSP_1573, RSP_1581, RSP_1615, RSP_1671, RSP_1684, RSP_1743, RSP_1852, RSP_2121, RSP_2125, RSP_2214, RSP_2219, RSP_2387, RSP_2638, RSP_2640, RSP_2641, RSP_2739, RSP_2763, RSP_2764, RSP_2816, RSP_2952, RSP_2953, RSP_3067, RSP_3068, RSP_3378, RSP_3426, RSP_3552, RSP_3597, RSP_3598, RSP_3634,...”

slr1194 hypothetical protein (NCBI ptt file) from Synechocystis sp. PCC 6803
Aligns to 2:122 / 222 (54.5%), covers 59.8% of PF04391, 31.3 bits

• Finding novel relationships with integrated gene-gene association network analysis of Synechocystis sp. PCC 6803 using species-independent text-mining
  Kreula, PeerJ 2018
  • “...et al., 1995 ). Another interesting candidate gene, found only in the CoEx network, is Slr1194. This node is annotated as a 1 protein that exhibits a high percentage similarity to a Mo-dependent nitrogenase family protein in Cyanothece sp. PCC 7424, and links to Zwf via...”

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