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Family Search for PF04393 (DUF535)

PF04393 hits 29 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

y2816 putative enzyme from Yersinia pestis KIM
YPO1363 putative virulence factor from Yersinia pestis CO92
YPTB1389 putative virulence factor from Yersinia pseudotuberculosis IP 32953
Aligns to 32:312 / 315 (89.2%), covers 99.3% of PF04393, 344.0 bits

YbjX / b0877 DUF535 domain-containing protein YbjX from Escherichia coli K-12 substr. MG1655 (see 4 papers)
Aligns to 47:326 / 330 (84.8%), covers 99.3% of PF04393, 342.2 bits

c1012 Hypothetical protein ybjX from Escherichia coli CFT073
Aligns to 47:326 / 330 (84.8%), covers 99.3% of PF04393, 341.6 bits

Z1112 putative enzyme from Escherichia coli O157:H7 EDL933
ECs0963 putative enzyme from Escherichia coli O157:H7 str. Sakai
Aligns to 47:326 / 330 (84.8%), covers 99.3% of PF04393, 341.1 bits

STM0940 Homolog of virK from Salmonella typhimurium LT2
Aligns to 39:318 / 322 (87.0%), covers 98.9% of PF04393, 335.5 bits

KPN_02355 putative enzyme from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Aligns to 34:314 / 322 (87.3%), covers 99.3% of PF04393, 334.1 bits

STM2781 virulence gene; homologous sequence to virK in Shigella from Salmonella typhimurium LT2
NP_461707 virK-like protein from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Aligns to 29:306 / 309 (90.0%), covers 99.3% of PF04393, 320.9 bits

SC2712 virulence gene; homologous sequence to virK in Shigella from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 29:306 / 309 (90.0%), covers 99.3% of PF04393, 320.3 bits

Ent638_1394 protein of unknown function DUF535 from Enterobacter sp. 638
Aligns to 35:314 / 318 (88.1%), covers 98.9% of PF04393, 311.8 bits

CP0237 VirK, required for proper localization of IcsA (VirG) at the surface of bacteria from Shigella flexneri 2a str. 301
Aligns to 25:301 / 316 (87.7%), covers 98.6% of PF04393, 305.5 bits

pWR501_0252 virulence factor VirK from Shigella flexneri 5a str. M90T
Aligns to 25:301 / 316 (87.7%), covers 98.6% of PF04393, 305.4 bits

Ent638_2409 protein of unknown function DUF535 from Enterobacter sp. 638
Aligns to 31:311 / 313 (89.8%), covers 99.3% of PF04393, 302.4 bits

ESA_02187 hypothetical protein from Enterobacter sakazakii ATCC BAA-894
Aligns to 31:309 / 313 (89.1%), covers 98.6% of PF04393, 301.2 bits

pCoo045 VirK from Escherichia coli
Aligns to 25:301 / 316 (87.7%), covers 98.6% of PF04393, 297.7 bits

NTHI0592 hypothetical protein from Haemophilus influenzae 86-028NP
Aligns to 23:290 / 291 (92.1%), covers 98.9% of PF04393, 295.3 bits

HI0461 conserved hypothetical protein from Haemophilus influenzae Rd KW20
Q57144 Uncharacterized protein HI_0461 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Aligns to 23:290 / 291 (92.1%), covers 98.9% of PF04393, 294.9 bits

R2866_0112 VirK/YbjX family protein from Haemophilus influenzae R2866
Aligns to 23:290 / 291 (92.1%), covers 98.9% of PF04393, 294.6 bits

CGSHi3655_02894 hypothetical protein from Haemophilus influenzae 3655
Aligns to 23:290 / 291 (92.1%), covers 98.9% of PF04393, 292.3 bits

VPA0243 putative virK protein from Vibrio parahaemolyticus RIMD 2210633
Aligns to 25:301 / 304 (91.1%), covers 97.9% of PF04393, 288.9 bits

VC1317 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 23:295 / 306 (89.2%), covers 98.9% of PF04393, 281.1 bits

R2866_1281 VirK/YbjX family protein from Haemophilus influenzae R2866
Aligns to 21:284 / 288 (91.7%), covers 97.9% of PF04393, 272.7 bits

APL_0453 hypothetical protein from Actinobacillus pleuropneumoniae L20
Aligns to 16:280 / 288 (92.0%), covers 99.3% of PF04393, 271.7 bits

APP7_0385 hypothetical protein from Actinobacillus pleuropneumoniae serovar 7 str. AP76
APL_0363 hypothetical protein from Actinobacillus pleuropneumoniae L20
Aligns to 19:287 / 290 (92.8%), covers 97.5% of PF04393, 256.6 bits

NMY220_1280 VirK/YbjX family protein from Neisseria meningitidis NM220
NMA1569 hypothetical membrane protein from Neisseria meningitidis Z2491
Aligns to 21:287 / 310 (86.1%), covers 97.5% of PF04393, 243.1 bits

PP3138, PP_3138 VirK domain protein from Pseudomonas putida KT2440
Aligns to 16:297 / 333 (84.7%), covers 98.9% of PF04393, 240.3 bits

Cj1069 hypothetical protein Cj1069 from Campylobacter jejuni subsp. jejuni NCTC 11168
Aligns to 16:282 / 288 (92.7%), covers 98.2% of PF04393, 219.6 bits

CJJ81176_1087 hypothetical protein from Campylobacter jejuni subsp. jejuni 81-176
Aligns to 16:282 / 288 (92.7%), covers 97.9% of PF04393, 214.5 bits

P32181 Membrane protein LapB from Mannheimia haemolytica
Aligns to 18:225 / 225 (92.4%), covers 76.5% of PF04393, 190.3 bits

I5G01_10980 DUF535 family protein from Klebsiella pneumoniae
Aligns to 36:290 / 302 (84.4%), covers 86.5% of PF04393, 151.0 bits

Or search for genetic data about PF04393 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory