PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04402 (SIMPL)

PF04402 hits 71 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SMc01556 CONSERVED HYPOTHETICAL PROTEIN from Sinorhizobium meliloti 1021
Aligns to 53:258 / 262 (78.6%), covers 100.0% of PF04402, 191.6 bits

BJS_05382 SIMPL domain-containing protein from Bradyrhizobium japonicum SEMIA 5079
Aligns to 33:231 / 239 (83.3%), covers 100.0% of PF04402, 190.8 bits

WP_213621447 SIMPL domain-containing protein from Paenibacillus sp. J22TS3
Aligns to 45:249 / 252 (81.3%), covers 100.0% of PF04402, 187.6 bits

WP_068612997 SIMPL domain-containing protein from Paenibacillus tuaregi
Aligns to 45:249 / 252 (81.3%), covers 100.0% of PF04402, 185.7 bits

Q540I8 BP26 from Brucella suis
P0A3U8 26 kDa periplasmic immunogenic protein from Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P0A3U9 26 kDa periplasmic immunogenic protein from Brucella suis biovar 1 (strain 1330)
Q6YA70 BP26 from Brucella ovis
Q6YA76 BP26 from Brucella abortus
Q71T34 Bp26 from Brucella ceti
Q71T35 Bp26 from Brucella pinnipedialis
BMEI0536 PERIPLASMIC IMMUNOGENIC PROTEIN from Brucella melitensis 16M
BR1475 immunoreactive 28 kDa outer membrane protein from Brucella suis 1330
BruAb1_1470 Omp28, immunoreactive 28 kDa outer membrane protein from Brucella abortus biovar 1 str. 9-941
Aligns to 40:247 / 250 (83.2%), covers 100.0% of PF04402, 185.5 bits

Q6GV67 Omp28 from Brucella melitensis
Aligns to 40:247 / 250 (83.2%), covers 100.0% of PF04402, 185.1 bits

BP26_BRUA1 / Q44642 26 kDa periplasmic immunogenic protein from Brucella abortus (strain S19) (see paper)
Q2YS14 Immunoreactive 28 kDa outer membrane protein from Brucella abortus (strain 2308)
BAB1_1494 immunoreactive 28 kDa outer membrane protein from Brucella melitensis biovar Abortus 2308
WP_002969580 outer membrane protein BP26/OMP28 from Brucella abortus 2308
Aligns to 40:247 / 250 (83.2%), covers 100.0% of PF04402, 184.4 bits

ZMO0286 hypothetical protein from Zymomonas mobilis subsp. mobilis ZM4
Aligns to 51:254 / 257 (79.4%), covers 99.0% of PF04402, 181.6 bits

BH11510 Outer membrane protein from Bartonella henselae str. Houston-1
Aligns to 42:242 / 245 (82.0%), covers 100.0% of PF04402, 178.1 bits

WP_127199307 SIMPL domain-containing protein from Paenibacillus zeisoli
Aligns to 46:249 / 252 (81.0%), covers 100.0% of PF04402, 175.9 bits

PMI2036 hypothetical protein from Proteus mirabilis HI4320
Aligns to 31:238 / 244 (85.2%), covers 100.0% of PF04402, 175.4 bits

RLO149_03347 hypothetical protein from Roseobacter litoralis Och 149
Aligns to 1:186 / 190 (97.9%), covers 93.2% of PF04402, 175.3 bits

MAP0440c LpqG from Mycobacterium avium subsp. paratuberculosis str. k10
Aligns to 45:246 / 249 (81.1%), covers 100.0% of PF04402, 175.1 bits

MSMEG_6109 LpqG protein from Mycobacterium smegmatis str. MC2 155
Aligns to 45:240 / 243 (80.7%), covers 100.0% of PF04402, 173.3 bits

SGRAN_2662 SIMPL domain-containing protein from Sphingopyxis granuli
Aligns to 42:246 / 250 (82.0%), covers 98.5% of PF04402, 173.2 bits

SEN2908 hypothetical protein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 30:231 / 248 (81.5%), covers 100.0% of PF04402, 173.1 bits

XF1123 outer membrane protein from Xylella fastidiosa 9a5c
Aligns to 39:238 / 242 (82.6%), covers 99.5% of PF04402, 173.0 bits

ETAE_2952 hypothetical protein from Edwardsiella tarda EIB202
Aligns to 32:235 / 239 (85.4%), covers 99.5% of PF04402, 172.2 bits

SFV_2968 putative actin from Shigella flexneri 5 str. 8401
Aligns to 19:219 / 235 (85.5%), covers 100.0% of PF04402, 171.8 bits

YggE / b2922 DUF541 domain-containing protein YggE from Escherichia coli K-12 substr. MG1655 (see 12 papers)
yggE / RF|NP_417397 uncharacterized protein yggE from Escherichia coli K12 (see paper)
Z4259 putative actin from Escherichia coli O157:H7 EDL933
NP_417397 DUF541 domain-containing protein YggE from Escherichia coli str. K-12 substr. MG1655
P0ADS6 Uncharacterized protein YggE from Escherichia coli (strain K12)
b2922 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 30:230 / 246 (81.7%), covers 100.0% of PF04402, 171.5 bits

all0089 hypothetical protein from Nostoc sp. PCC 7120
Aligns to 19:219 / 221 (91.0%), covers 99.5% of PF04402, 171.0 bits

c3500 Hypothetical protein yggE from Escherichia coli CFT073
Aligns to 30:230 / 246 (81.7%), covers 100.0% of PF04402, 170.3 bits

YPO0917 putative exported protein from Yersinia pestis CO92
Aligns to 34:237 / 259 (78.8%), covers 99.5% of PF04402, 169.9 bits

plu3611 No description from Photorhabdus luminescens subsp. laumondii TTO1
Aligns to 31:236 / 240 (85.8%), covers 99.0% of PF04402, 169.7 bits

YP_3614 putative exported protein from Yersinia pestis biovar Medievalis str. 91001
Aligns to 55:258 / 280 (72.9%), covers 99.5% of PF04402, 169.6 bits

SENTW_3181 oxidative stress defense protein from Salmonella enterica subsp. enterica serovar Weltevreden str.
Aligns to 30:231 / 248 (81.5%), covers 100.0% of PF04402, 169.6 bits

HVO_1926 Protein of unknown function (DUF541) superfamily from Haloferax volcanii DS2
Aligns to 44:245 / 250 (80.8%), covers 100.0% of PF04402, 167.4 bits

Rv3623 PROBABLE CONSERVED LIPOPROTEIN LPQG from Mycobacterium tuberculosis H37Rv
Aligns to 38:237 / 240 (83.3%), covers 100.0% of PF04402, 166.3 bits

Vpar_0473 protein of unknown function DUF541 from Veillonella parvula DSM 2008
Aligns to 38:240 / 243 (83.5%), covers 100.0% of PF04402, 163.5 bits

THC0290_1426 SIMPL domain-containing protein from Flavobacterium psychrophilum
Aligns to 29:228 / 231 (86.6%), covers 100.0% of PF04402, 161.0 bits

M892_13325 oxidative stress defense protein from Vibrio campbellii ATCC BAA-1116
Aligns to 30:228 / 231 (86.1%), covers 100.0% of PF04402, 161.0 bits

Q9KUN2 Oxidative stress defense protein from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
VC0483 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 35:234 / 238 (84.0%), covers 100.0% of PF04402, 156.5 bits

slr0431 unknown protein from Synechocystis sp. PCC 6803
Aligns to 48:248 / 250 (80.4%), covers 99.5% of PF04402, 155.6 bits

bp26 / CAA90862.1 bp26 from Brucella abortus (see paper)
Aligns to 40:256 / 259 (83.8%), covers 100.0% of PF04402, 153.4 bits

BA4304 conserved hypothetical protein from Bacillus anthracis str. Ames
Aligns to 23:220 / 223 (88.8%), covers 100.0% of PF04402, 150.7 bits

SCO2021 hypothetical protein from Streptomyces coelicolor A3(2)
Aligns to 1:193 / 197 (98.0%), covers 97.6% of PF04402, 145.2 bits

Hlac_2298 protein of unknown function DUF541 from Halorubrum lacusprofundi ATCC 49239
Aligns to 44:246 / 251 (80.9%), covers 100.0% of PF04402, 136.1 bits

TDE1584 lipoprotein, putative from Treponema denticola ATCC 35405
Aligns to 35:246 / 249 (85.1%), covers 100.0% of PF04402, 129.2 bits

LIC11334 conserved hypothetical protein from Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Aligns to 27:220 / 223 (87.0%), covers 100.0% of PF04402, 126.9 bits

Y5A_011315 SIMPL domain-containing protein from Burkholderia glumae AU6208
Aligns to 35:234 / 237 (84.4%), covers 99.0% of PF04402, 126.4 bits

BCAL2669 hypothetical protein from Burkholderia cenocepacia J2315
Aligns to 44:243 / 246 (81.3%), covers 99.0% of PF04402, 126.1 bits

WP_016560806 SIMPL domain-containing protein from Leptospira kirschneri serovar Cynopteri str. 3522 CT
Aligns to 27:222 / 225 (87.1%), covers 100.0% of PF04402, 125.2 bits

BPSL0972 putative exported protein from Burkholderia pseudomallei K96243
Aligns to 43:242 / 245 (81.6%), covers 99.0% of PF04402, 124.0 bits

PA4495 hypothetical protein from Pseudomonas aeruginosa PAO1
Q9HVS6 DUF541 domain-containing protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Aligns to 31:231 / 236 (85.2%), covers 99.5% of PF04402, 120.7 bits

EY04_RS03745 SIMPL domain-containing protein from Pseudomonas chlororaphis
Aligns to 34:233 / 238 (84.0%), covers 99.0% of PF04402, 118.4 bits

PP0886 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 33:231 / 238 (83.6%), covers 98.0% of PF04402, 117.3 bits

A1S_2455 putative signal peptide from Acinetobacter baumannii ATCC 17978
Aligns to 15:213 / 216 (92.1%), covers 99.5% of PF04402, 115.5 bits

V5VB00 DUF541 domain-containing protein from Acinetobacter baumannii
ABUW_1108, ABZJ_02909 SIMPL domain-containing protein from Acinetobacter baumannii 942133
Aligns to 32:230 / 233 (85.4%), covers 99.5% of PF04402, 115.2 bits

PSPTO_4555 conserved hypothetical protein from Pseudomonas syringae pv. tomato str. DC3000
Aligns to 32:232 / 237 (84.8%), covers 99.0% of PF04402, 114.0 bits

D0CBW9 Uncharacterized protein from Acinetobacter baumannii (strain ATCC 19606 / DSM 30007 / JCM 6841 / CCUG 19606 / CIP 70.34 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81)
HMPREF0010_02249 SIMPL domain-containing protein from Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
Aligns to 32:230 / 233 (85.4%), covers 99.5% of PF04402, 113.7 bits

FSU_2695 SIMPL domain-containing protein from Fibrobacter succinogenes subsp. succinogenes S85
Aligns to 48:258 / 261 (80.8%), covers 100.0% of PF04402, 104.7 bits

MSMEG_6215 hypothetical protein from Mycobacterium smegmatis str. MC2 155
Aligns to 23:235 / 241 (88.4%), covers 100.0% of PF04402, 97.7 bits

IKBP1_MOUSE / Q9ESJ7 Interleukin-1 receptor-associated kinase 1-binding protein 1; IRAK1-binding protein 1; ActA-binding protein 70; PLK-interacting protein; Signaling molecule that associates with the mouse pelle-like kinase; SIMPL from Mus musculus (Mouse) (see 4 papers)
NP_075362 interleukin-1 receptor-associated kinase 1-binding protein 1 isoform 1 from Mus musculus
Aligns to 52:247 / 259 (75.7%), covers 95.6% of PF04402, 96.1 bits

Q9JZY4 Periplasmic protein from Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Aligns to 27:234 / 234 (88.9%), covers 99.0% of PF04402, 95.3 bits

NMC0788 putative periplasmic protein from Neisseria meningitidis FAM18
Aligns to 27:234 / 234 (88.9%), covers 99.0% of PF04402, 92.4 bits

NMA1059 putative periplasmic protein from Neisseria meningitidis Z2491
Aligns to 27:234 / 234 (88.9%), covers 99.0% of PF04402, 91.1 bits

Q5F9H4 DUF541 domain-containing protein from Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Aligns to 37:244 / 244 (85.2%), covers 99.0% of PF04402, 86.0 bits

PM1566 unknown from Pasteurella multocida subsp. multocida str. Pm70
Aligns to 31:232 / 237 (85.2%), covers 99.5% of PF04402, 79.5 bits

HD0680 conserved hypothetical protein from Haemophilus ducreyi 35000HP
Aligns to 21:222 / 225 (89.8%), covers 97.1% of PF04402, 77.8 bits

ECs2473 hypothetical lipoprotein from Escherichia coli O157:H7 str. Sakai
Aligns to 42:236 / 240 (81.2%), covers 100.0% of PF04402, 67.4 bits

Z2800 SIMPL domain-containing protein from Escherichia coli O157:H7 str. EDL933
Aligns to 38:232 / 236 (82.6%), covers 100.0% of PF04402, 67.4 bits

M892_08695 SIMPL domain-containing protein from Vibrio campbellii ATCC BAA-1116
Aligns to 41:235 / 239 (81.6%), covers 79.0% of PF04402, 63.1 bits

SO3101 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 41:228 / 238 (79.0%), covers 79.5% of PF04402, 60.2 bits

CJJ81176_0072 hypothetical protein from Campylobacter jejuni subsp. jejuni 81-176
Aligns to 37:224 / 233 (80.7%), covers 79.5% of PF04402, 57.9 bits

VV0509 conserved hypothetical protein from Vibrio vulnificus YJ016
Aligns to 41:233 / 238 (81.1%), covers 79.5% of PF04402, 56.8 bits

CJE0033 hypothetical protein from Campylobacter jejuni RM1221
Cj0034c putative periplasmic protein from Campylobacter jejuni subsp. jejuni NCTC 11168
YP_002343505 periplasmic protein from Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Aligns to 37:224 / 233 (80.7%), covers 79.5% of PF04402, 55.7 bits

U3KQ34 Interleukin 1 receptor associated kinase 1 binding protein 1 from Homo sapiens
Aligns to 12:161 / 192 (78.1%), covers 64.9% of PF04402, 50.6 bits

XP_011533750 interleukin-1 receptor-associated kinase 1-binding protein 1 isoform X3 from Homo sapiens
Aligns to 53:147 / 157 (60.5%), covers 32.2% of PF04402, 46.2 bits

BBK13 conserved hypothetical protein from Borrelia burgdorferi B31
Aligns to 45:224 / 238 (75.6%), covers 78.0% of PF04402, 40.8 bits

WS1329 PUTATIVE PERIPLASMIC PROTEIN from Wolinella succinogenes DSM 1740
Aligns to 51:244 / 246 (78.9%), covers 82.9% of PF04402, 30.1 bits

VV1_0634 hypothetical protein from Vibrio vulnificus CMCP6
Aligns to 38:151 / 170 (67.1%), covers 52.7% of PF04402, 27.9 bits

Or search for genetic data about PF04402 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory