Family Search for PF04510 (DUF577)

April 2024: GapMind for amino acid biosynthesis has been updated to include newly-discovered enzymes and comparative genomics predictions (see details)

PF04510 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Q9FG41 non-reducing end alpha-L-arabinofuranosidase (EC 3.2.1.55) from Arabidopsis thaliana (see paper)
2 alignments in 100:557 / 629 (55.2%), covering up to 100.0% of PF04510, 464.1 bits

AT5G37920 hypothetical protein from Arabidopsis thaliana
2 alignments in 98:553 / 609 (57.6%), covering up to 100.0% of PF04510, 435.0 bits

• Solution structure of At3g28950 from Arabidopsis thaliana
  de, Proteins 2008
  • “...of AIG2-Like Family Members Gene At3g28950 At5g37920 AIG2 At3g28940 At5g39730 At4g31310 At2g24390 Inducibility Tissue location Constitutively expressed...”

AT5G37400 hypothetical protein from Arabidopsis thaliana
2 alignments in 107:565 / 623 (55.2%), covering up to 100.0% of PF04510, 411.5 bits

• Global gene regulatory network underlying miR165a in Arabidopsis shoot apical meristem
  Sinha, Scientific reports 2023
  • “...AT3G43350 Transposable element gene 2.97 2.73 2.84 2.90 AT3G44690 Hypothetical protein 1.95 2.09 2.02 1.98 AT5G37400 Hypothetical protein 1.28 1.20 1.07 1.14 Important plant development related genes AT1G75450 Cytokinin Oxidase 5 (CKX5) Degrade cytokinin 1.03 AT2G21050 Like AUXIN RESISTANT 2 (LAX2) Auxin influx carrier 1.03 1.06...”
• The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress
  Thatcher, PloS one 2015
  • “...AT5G37750 3.70 8.8E-03 Chaperone DnaJ-domain superfamily protein AT1G51520 2.06 9.4E-03 RNA-binding (RRM/RBD/RNP motifs) family protein AT5G37400 2.15 9.4E-03 Family of unknown function (DUF577) AT3G18970 MEF20 2.18 1.0E-02 mitochondrial editing factor 20 AT1G20080 SYTB 7.60 1.1E-02 Calcium-dependent lipid-binding (CaLB domain) family protein AT5G23270 STP11 6.74 1.2E-02 sugar...”

AT5G37650 hypothetical protein from Arabidopsis thaliana
2 alignments in 92:550 / 607 (56.7%), covering up to 100.0% of PF04510, 402.3 bits

• Ectopic RING zinc finger gene from hot pepper induces totally different genes in lettuce and tobacco
  Kesawat, Molecular breeding : new strategies in plant improvement 2018
  • “...Pentatricopeptide repeat (PPR) superfamily protein 1.40 0.75 0.81 3.11 AtCG00290 tRNA-Ser 0.17 0.74 .074 2.64 At5g37650 Uncharacterized gene 0.71 1.07 1.38 3.17 At3g52742 Uncharacterized gene 0.41 1.10 0.12 2.14 At3g15518 Uncharacterized gene 2.26 2.12 1.73 3.95 Gene symbols Gene description CaRZFP1 -transgenic tobacco/vector controls (log 2...”

AT5G37420 AGL105; transcription factor from Arabidopsis thaliana
2 alignments in 99:491 / 579 (45.1%), covering up to 100.0% of PF04510, 319.4 bits

• Spaceflight transcriptomes: unique responses to a novel environment
  Paul, Astrobiology 2012
  • “...5.28 5.21 5.17 5.13 At3g16050 At2g39450 At2g33770 At5g37420 At4g16320 5.13 5.03 At1g70290 At5g05410 0.20 0.20 0.20 At3g05710 At1g05760 At3g20290 0.19 At2g31960...”
• Searching for bidirectional promoters in Arabidopsis thaliana
  Wang, BMC bioinformatics 2009
  • “...GO:0008289 MF GO:0031225 CC GO:0006869 BP lipid binding anchored to membrane lipid transport 13 AT5G37415 AT5G37420 32.2238 GO:0003700 MF transcription factor activity 14 AT5G41020 AT5G41030 55.2906 GO:0003700 MF transcription factor activity 15 AT4G38840 AT4G38850 35.204 GO:0009733 BP response to auxin stimulus 16 AT5G18050 AT5G18060 36.3317 GO:0009733...”

AT1G66060 hypothetical protein from Arabidopsis thaliana
Aligns to 107:275 / 315 (53.7%), covers 98.8% of PF04510, 176.9 bits

• Expression of ROS-responsive genes and transcription factors after metabolic formation of H(2)O(2) in chloroplasts
  Balazadeh, Frontiers in plant science 2012
  • “...binding factor (ERF6) At5g47230 1.3 17.4 13.8 1.5 4.4 3.0 Ethylene-responsive element binding factor (ERF5) At1g66060 1.3 17.5 13.2 2.7 5.1 1.9 Protein of unknown function At2g32030 1.3 16.4 12.2 1.9 24.5 12.9 Putative GNAT-type N-acetyltransferase At2g26530 * 1.2 13.3 10.7 2.1 5.4 2.5 Protein of...”
  • “...1.78 2.26 2.80 3.71 4.75 4.20 At1g63720 0.63 2.31 1.45 1.89 1.65 2.61 4.47 3.77 At1g66060 0.40 4.13 0.65 1.31 1.45 2.35 3.48 3.19 At1g69890 0.40 3.99 0.98 0.72 0.30 1.17 2.46 1.52 At1g72520 0.76 3.97 2.97 2.83 2.25 3.28 2.90 2.46 At1g73010 1.19 0.41 3.01...”

AT1G66110 hypothetical protein from Arabidopsis thaliana
Aligns to 121:290 / 338 (50.3%), covers 98.8% of PF04510, 164.7 bits

• Plastid casein kinase 2 knockout reduces abscisic acid (ABA) sensitivity, thermotolerance, and expression of ABA- and heat-stress-responsive nuclear genes
  Wang, Journal of experimental botany 2014
  • “...CS31135 obtained from the Arabidopsis Biological Resource Center had a second T-DNA insertion at the At1g66110 gene besides the CKA4 knockout mutation. To verify that the At1g66110 mutation was absent in the progeny of CS311135, specific primers for At1g66110 downstream of the T-DNA-insertion site ( Supplementary...”
  • “...gene. Progeny of CS311135 with the presence of the cka4 mutation and absence of the At1g66110 knockout mutation were used for this study. Fig. 1. CK2 4 ( CKA4 ) and 3 ( CKA3 ) transcript levels in CS311135 ( cka4 ), SALK_022432c ( cka3-cka4-1 ),...”

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